https://wiki.genometracker.org/index.php?action=history&feed=atom&title=Monte_Carlo_Club 2026-05-07T13:46:41Z Revision history for this page on the wiki MediaWiki 1.39.2 https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6659&oldid=prev 2026-05-04T18:32:08Z

<p><span dir="auto"><span class="autocomment">Tick genomics &amp; native immunity</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:32, 4 May 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7">Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Tick microbiome: [https://journals.asm.org/doi/10.1128/spectrum.01404-23 Paulson et al (2023);] Microbio Spectrum</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Tick microbiome: [https://journals.asm.org/doi/10.1128/spectrum.01404-23 Paulson et al (2023);] Microbio Spectrum</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* The tick genome paper: [https://www.nature.com/articles/s41588-022-01275-w De et al (2023).] Nature Genetics</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* The tick genome paper: [https://www.nature.com/articles/s41588-022-01275-w De et al (2023).] Nature Genetics</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Tcik genome resource</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Tcik genome resource<ins style="font-weight: bold; text-decoration: none;">:</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings on Microbiome &amp; Evolution of Complexity: the Holobionts/Gia hypothesis vs Non-adaptive selection==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings on Microbiome &amp; Evolution of Complexity: the Holobionts/Gia hypothesis vs Non-adaptive selection==</div></td></tr> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6658&oldid=prev 2026-05-04T18:26:32Z

<p><span dir="auto"><span class="autocomment">Mcirobiome: Ecology &amp; Evolution perspectives (Spring 2026)</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:26, 4 May 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__FORCETOC__</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__FORCETOC__</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome: Ecology &amp; Evolution perspectives (Spring 2026)=</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome <ins style="font-weight: bold; text-decoration: none;">&amp; tick pop gen</ins>: Ecology &amp; Evolution perspectives (Spring <ins style="font-weight: bold; text-decoration: none;">&amp; Summer </ins>2026)=</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">==Tick genomics &amp; native immunity==</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Mini-review: [https://www.frontiersin.org/journals/cellular-and-infection-microbiology/articles/10.3389/fcimb.2018.00176/full Kitsou &amp; Pal (2018).] Ixodes immune responses against Lyme disease pathogens. Font Cell Infect Microb.</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* The IMD pathway: [https://journals.asm.org/doi/10.1128/mbio.00703-22 Sidak-Loftis et al (2022)]; mBio</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* The PERK pathway: [https://journals.asm.org/doi/10.1128/msphere.00321-23 Rosche et al (2023)]; mSphere</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Tick microbiome: [https://journals.asm.org/doi/10.1128/spectrum.01404-23 Paulson et al (2023);] Microbio Spectrum</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* The tick genome paper: [https://www.nature.com/articles/s41588-022-01275-w De et al (2023).] Nature Genetics</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Tcik genome resource</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==Readings <ins style="font-weight: bold; text-decoration: none;">on Microbiome &amp; Evolution of Complexity: the Holobionts/Gia hypothesis vs Non-adaptive selection</ins>==</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [https://press.uchicago.edu/ucp/books/book/chicago/N/bo244157692.html Non-adaptive Selection], by John Damuth &amp; Lev Ginzburg</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Guilhem Doulcier, Amaury Lambert, Silvia De Monte, Paul B Rainey (2020) Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity eLife 9:e53433. https://doi.org/10.7554/eLife.53433  </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Guilhem Doulcier, Amaury Lambert, Silvia De Monte, Paul B Rainey (2020) Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity eLife 9:e53433. https://doi.org/10.7554/eLife.53433  </div></td></tr> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6652&oldid=prev 2026-01-06T19:58:53Z

<p><span dir="auto"><span class="autocomment">Mcirobiome: an Ecology &amp; Evolution perspective (Spring 2026)</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 19:58, 6 January 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__FORCETOC__</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__FORCETOC__</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome: <del style="font-weight: bold; text-decoration: none;">an </del>Ecology &amp; Evolution <del style="font-weight: bold; text-decoration: none;">perspective </del>(Spring 2026)=</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome: Ecology &amp; Evolution <ins style="font-weight: bold; text-decoration: none;">perspectives </ins>(Spring 2026)=</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td></tr> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6651&oldid=prev 2026-01-06T18:43:12Z

<p><span dir="auto"><span class="autocomment">Readings</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:43, 6 January 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Guilhem Doulcier, Amaury Lambert, Silvia De Monte, Paul B Rainey (2020) Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity eLife 9:e53433. https://doi.org/10.7554/eLife.53433  </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* </ins>Guilhem Doulcier, Amaury Lambert, Silvia De Monte, Paul B Rainey (2020) Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity eLife 9:e53433. https://doi.org/10.7554/eLife.53433  </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* J. Madhusoodanan, Do hosts and their microbes evolve as a unit?, Proc. Natl. Acad. Sci. U.S.A. 116 (29) 14391-14394, https://doi.org/10.1073/pnas.1908139116 (2019).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* J. Madhusoodanan, Do hosts and their microbes evolve as a unit?, Proc. Natl. Acad. Sci. U.S.A. 116 (29) 14391-14394, https://doi.org/10.1073/pnas.1908139116 (2019).</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Douglas AE, Werren JH.2016.Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts. mBio7:10.1128/mbio.02099-15.https://doi.org/10.1128/mbio.02099-15</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Douglas AE, Werren JH. 2016.Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts. mBio7:10.1128/mbio.02099-15.https://doi.org/10.1128/mbio.02099-15</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: &#039;&#039;&#039;the hologenome theory&#039;&#039;&#039; of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: &#039;&#039;&#039;the hologenome theory&#039;&#039;&#039; of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Seth R Bordenstein &amp; Kevin R Theis (2015). Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes. PLoS Biology. https://doi.org/10.1371/journal.pbio.1002226</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td></tr> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6650&oldid=prev 2026-01-06T18:31:54Z

<p><span dir="auto"><span class="autocomment">Readings</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:31, 6 January 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with &#039;&#039;&#039;replicator-interactor theory&#039;&#039;&#039;, Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">* Ilana Zilber-Rosenberg</del>, <del style="font-weight: bold; text-decoration: none;">Eugene Rosenberg</del>, <del style="font-weight: bold; text-decoration: none;">Role </del>of <del style="font-weight: bold; text-decoration: none;">microorganisms in </del>the <del style="font-weight: bold; text-decoration: none;">evolution </del>of <del style="font-weight: bold; text-decoration: none;">animals and plants</del>: <del style="font-weight: bold; text-decoration: none;">&#039;&#039;&#039;the hologenome theory&#039;&#039;&#039; of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, </del>https://doi.org/10.<del style="font-weight: bold; text-decoration: none;">1111</del>/<del style="font-weight: bold; text-decoration: none;">j.1574-6976.2008.00123</del>.<del style="font-weight: bold; text-decoration: none;">x</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Guilhem Doulcier, Amaury Lambert</ins>, <ins style="font-weight: bold; text-decoration: none;">Silvia De Monte</ins>, <ins style="font-weight: bold; text-decoration: none;">Paul B Rainey (2020) Eco-evolutionary dynamics </ins>of <ins style="font-weight: bold; text-decoration: none;">nested Darwinian populations and </ins>the <ins style="font-weight: bold; text-decoration: none;">emergence </ins>of <ins style="font-weight: bold; text-decoration: none;">community-level heredity eLife 9</ins>:<ins style="font-weight: bold; text-decoration: none;">e53433. </ins>https://doi.org/10.<ins style="font-weight: bold; text-decoration: none;">7554</ins>/<ins style="font-weight: bold; text-decoration: none;">eLife</ins>.<ins style="font-weight: bold; text-decoration: none;">53433 </ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* J. Madhusoodanan, Do hosts and their microbes evolve as a unit?, Proc. Natl. Acad. Sci. U.S.A. 116 (29) 14391-14394, https://doi.org/10.1073/pnas.1908139116 (2019).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* J. Madhusoodanan, Do hosts and their microbes evolve as a unit?, Proc. Natl. Acad. Sci. U.S.A. 116 (29) 14391-14394, https://doi.org/10.1073/pnas.1908139116 (2019).</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Douglas AE, Werren JH.2016.Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts. mBio7:10.1128/mbio.02099-15.https://doi.org/10.1128/mbio.02099-15</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: '''the hologenome theory''' of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td></tr> <!-- diff cache key my_wiki:diff::1.12:old-6649:rev-6650 --> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6649&oldid=prev 2026-01-06T18:25:56Z

<p><span dir="auto"><span class="autocomment">Readings</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:25, 6 January 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l2">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome: an Ecology &amp; Evolution perspective (Spring 2026)=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome: an Ecology &amp; Evolution perspective (Spring 2026)=</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* C.H. Lean, W.F. Doolittle, &amp; J.P. Bielawski, Community-level evolutionary processes: Linking community genetics with '''replicator-interactor theory''', Proc. Natl. Acad. Sci. U.S.A. 119 (46) e2202538119, https://doi.org/10.1073/pnas.2202538119 (2022).</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: &#039;&#039;&#039;the hologenome theory&#039;&#039;&#039; of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: &#039;&#039;&#039;the hologenome theory&#039;&#039;&#039; of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td></tr> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6648&oldid=prev 2026-01-06T18:23:07Z

<p><span dir="auto"><span class="autocomment">Readings</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:23, 6 January 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l4">Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: &#039;&#039;&#039;the hologenome theory&#039;&#039;&#039; of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: &#039;&#039;&#039;the hologenome theory&#039;&#039;&#039; of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 (the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* J. Madhusoodanan, Do hosts and their microbes evolve as a unit?, Proc. Natl. Acad. Sci. U.S.A. 116 (29) 14391-14394, https://doi.org/10.1073/pnas.1908139116 (2019).</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td></tr> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6647&oldid=prev 2026-01-06T18:15:52Z

<p><span dir="auto"><span class="autocomment">Readings</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:15, 6 January 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l2">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome: an Ecology &amp; Evolution perspective (Spring 2026)=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Mcirobiome: an Ecology &amp; Evolution perspective (Spring 2026)=</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Readings==</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: <del style="font-weight: bold; text-decoration: none;">&lt;bold&gt;</del>the hologenome theory<del style="font-weight: bold; text-decoration: none;">&lt;\bold&gt; </del>of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: <ins style="font-weight: bold; text-decoration: none;">&#039;&#039;&#039;</ins>the hologenome theory<ins style="font-weight: bold; text-decoration: none;">&#039;&#039;&#039; </ins>of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology&#039;s first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735 <ins style="font-weight: bold; text-decoration: none;">(the &quot;&#039;&#039;&#039;The zero-force evolutionary law (ZFEL)&#039;&#039;&#039;&quot;)</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td></tr> <!-- diff cache key my_wiki:diff::1.12:old-6646:rev-6647 --> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6646&oldid=prev 2026-01-06T18:01:20Z

<p><span dir="auto"><span class="autocomment">Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:01, 6 January 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__FORCETOC__</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__FORCETOC__</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">=Mcirobiome: an Ecology &amp; Evolution perspective (Spring 2026)=</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">==Readings==</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Ilana Zilber-Rosenberg, Eugene Rosenberg, Role of microorganisms in the evolution of animals and plants: &lt;bold>the hologenome theory&lt;\bold> of evolution, FEMS Microbiology Reviews, Volume 32, Issue 5, August 2008, Pages 723–735, https://doi.org/10.1111/j.1574-6976.2008.00123.x</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Daniel W. McShea, Steve C. Wang, Robert N. Brandon, A quantitative formulation of biology's first law, Evolution, Volume 73, Issue 6, 1 June 2019, Pages 1101–1115, https://doi.org/10.1111/evo.13735</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Coevolution, Misinformation, and Sex (Summer &amp; Fall 2025)=</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Schedule &amp; Notes==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Schedule &amp; Notes==</div></td></tr> <!-- diff cache key my_wiki:diff::1.12:old-6619:rev-6646 --> </table>

Wikiuser https://wiki.genometracker.org/index.php?title=Monte_Carlo_Club&diff=6619&oldid=prev 2025-08-15T16:26:46Z

<p><span dir="auto"><span class="autocomment">Schedule &amp; Notes</span></span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:26, 15 August 2025</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l30">Line 30:</td> <td colspan="2" class="diff-lineno">Line 30:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** Next task: implement relative conditional entropy (RCE) as an asymmetric measure of information content between two loci</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** Next task: implement relative conditional entropy (RCE) as an asymmetric measure of information content between two loci</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Week 7 (break)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Week 7 (break)</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Week 8 (<del style="font-weight: bold; text-decoration: none;">Monday</del>, Aug <del style="font-weight: bold; text-decoration: none;">11</del>, 2025)</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Week 8 (<ins style="font-weight: bold; text-decoration: none;">Wed</ins>, Aug <ins style="font-weight: bold; text-decoration: none;">13</ins>, 2025)</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** <del style="font-weight: bold; text-decoration: none;">Next task</del>: <del style="font-weight: bold; text-decoration: none;">quantifying </del>genetic differentiation between two populations: Fst (hz, pi) &amp; Jensen-Shannon divergence</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** <ins style="font-weight: bold; text-decoration: none;">Ryan &amp; Sebastian</ins>: <ins style="font-weight: bold; text-decoration: none;">RCE on Lyme data with bootstrap tests; Quantify </ins>genetic differentiation between two populations: Fst (hz, pi) &amp; Jensen-Shannon divergence</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** Brian: automata model for generalists and specialist</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** Brandon: hybrid models with two loci, one under immune selection, another under adaptive selection. Results similar to immune-selection model alone</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Week 9 (Friday, Aug 21, 2025)</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** End-of-summer party</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** Bootstrap on RCE, by break linkage</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** Agricultural optimization problem</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** Quarto book/website to summarize all work (code and visualization)</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Reading list==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Reading list==</div></td></tr> <!-- diff cache key my_wiki:diff::1.12:old-6615:rev-6619 --> </table>

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