Revision as of 16:32, 23 October 2013

Results: Wednesday, October 16, 2013

Comparison of 3 Samples with total mRNA

Title	Plot	Plot (scaled by gene)
Heatmap of 89 significant genes	File:Heatmap-76sig-genes-4sample.pdf	File:Heatmap-76sig-genes-4sample-scaled.pdf

mRNA export affected by KD or OE of nup211

Title	Plot
Export (C/N) of 40 genes affected by KD of nup211 (heatmap)	File:Heatmap-40genes-export-KD.pdf
Export (C/N) of 39 genes affected by OE of nup211 (heatmap)	File:Heatmap-39genes-export-OE.pdf

Comparison of 4 Samples with total mRNA

Title	Plot	Plot (scaled by gene)
Heatmap of 76 significant genes	File:Heatmap-76sig-genes-4sample.pdf	File:Heatmap-76sig-genes-4sample-scaled.pdf

Comparison of all 10 Samples

Title	Plot	Plot (scaled by gene)
Barplot Nup 211	File:Nup211.pdf
Heatmap of 13 genes of interest	File:Heatmap-13interested-genes-10sample.pdf
Heatmap of 80 significant genes	File:Heatmap-80sig-genes.pdf	File:Heatmap-80sig-genes-scaled-by-gene.pdf
Heatmap of 39 genes of interest	File:Heatmap-39interested-genes.pdf	File:Heatmap-39interested-genes-scaled-by-gene.pdf

Comparison between Samples 1,4,7, and 10

Title	Plots
Volcano Plots
Heatmap of 13 genes of interest	File:Heatmap-13interested-genes.pdf
Heatmap of 76 significant genes	File:Heatmap-76sig-genes.pdf

Trapnell et al (2012). Nature Protocol. 7(2): 562.
File:Texudo-pipeline-nprot.2012.016.pdf
PDF
Goff et al (2012). CummeRbund Manual
File:CummeRbund-manual.pdf

@@ Line 1: / Line 1: @@
+=Results: Wednesday, October 16, 2013=
+Comparison of 3 Samples with total mRNA
+{| class="wikitable"
+|-
+! Title !! Plot || Plot (scaled by gene)
+|-
+| Heatmap of 89 significant genes || [[File:Heatmap-76sig-genes-4sample.pdf|thumbnail]] || [[File:heatmap-76sig-genes-4sample-scaled.pdf|thumbnail]]
+|}
 =Results: Thursday, October 17, 2013=
 mRNA export affected by KD or OE of nup211