Revision as of 20:34, 13 February 2014

Project Goals

Annotate and add newly sequenced Borrelia genomes to BorreliaBase
Build an informatics pipeline for gene prediction, ortholog calls, databasing, and synteny analysis

Strain	Species	Group	Genome Sequences	Notes
B31	B. burgdorferi (reference genome)	Lyme Disease	main chromosome cp26 plasmid lp54 plasmid	Example
CA382	B. burgdorferi	Lyme Disease	main chromosome	Example
CA8	B. burgdorferi	Lyme Disease	8 unassembled contigs	Example
BgVir	B. garinii	Lyme Disease	main chromosome cp26 lp54	Example
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@@ Line 5: / Line 5: @@
 {| class="wikitable sortable"
 |-
-! Strain !! Species !! Group !! GenBank Link !! Header text
+! Strain !! Species !! Group !! Genome Sequences !! Notes
 |-
 | B31 || B. burgdorferi (reference genome) || Lyme Disease ||
-* [http://www.ncbi.nlm.nih.gov/nuccore/AE000783.1 Main chromosome]
+* [http://www.ncbi.nlm.nih.gov/nuccore/AE000783.1 main chromosome]
 * [http://www.ncbi.nlm.nih.gov/nuccore/AE000792.1 cp26 plasmid]
 * [http://www.ncbi.nlm.nih.gov/nuccore/AE000790.2 lp54 plasmid]
   || Example
 |-
-| Example || Example || Example || Example || Example
+| CA382 || B. burgdorferi || Lyme Disease ||
+* [http://www.ncbi.nlm.nih.gov/nuccore/CP005925.1 main chromosome]
+|| Example
 |-
-| Example || Example || Example || Example || Example
+| CA8 || B. burgdorferi || Lyme Disease ||
+* [http://www.ncbi.nlm.nih.gov/nuccore/?term=ADMY01000001:ADMY01000007%5Baccn%5D 8 unassembled contigs]
+|| Example
 |-
-| Example || Example || Example || Example || Example
+| BgVir || B. garinii || Lyme Disease ||
+* [http://www.ncbi.nlm.nih.gov/nuccore/CP003151.1 main chromosome]
+* [http://www.ncbi.nlm.nih.gov/nuccore/CP003201.1 cp26]
+* [http://www.ncbi.nlm.nih.gov/nuccore/CP003202.1 lp54]
+|| Example
 |-
 | Example || Example || Example || Example || Example