Revision as of 21:08, 13 February 2014

Project Goals

Annotate and add newly sequenced Borrelia genomes to BorreliaBase
Build an informatics pipeline for gene prediction, ortholog calls, databasing, and synteny analysis

Strain	Species	Group	Genome Sequences	Notes
B31	B. burgdorferi (reference genome)	Lyme Disease	main chromosome cp26 plasmid lp54 plasmid	Example
CA382	B. burgdorferi (California)	Lyme Disease	main chromosome	Example
CA8	B. burgdorferi (California)	Lyme Disease	8 unassembled contigs	Example
BgVir	B. garinii (Russia)	Lyme Disease	main chromosome cp26 lp54	Example
NMJW1	B. garinii (China)	Lyme Disease	main chromosome	Example
HLJ01	B. afzelii (China)	Lyme Disease	main chromosome	Example
Ly	B. duttonii (Tanzania)	Relapsing Fever	main chromosome lp23 (homolog of cp26 in LD genomes) Many other plasmids (not to include)	Example
A1	B. recurrentis (Ethiopia)	Relapsing Fever	main chromosome lp124 (homologous to lp54 in LD genomes) lp23	Example
DAH	B. hermsii (Washington State)	Relapsing Fever	main chromosome	Example
91E135	B. turicatae (Texas)	Relapsing Fever	main chromosome	Example
Achema	B. crocidurae (Mauritania)	Relapsing Fever	main chromosome Many unassembled plasmids (not to include)	Example
HR1	B. parkeri	Relapsing Fever (??)	main chromosome	Example
LB-2001	B. miyamotoi (Northeast US)	Relapsing Fever	main chromosome	Example

@@ Line 60: / Line 60: @@
 || Example
 |-
-| Example || Example || Example || Example || Example
+| HR1 || B. parkeri || Relapsing Fever (??) ||
+* [http://www.ncbi.nlm.nih.gov/nuccore/CP007022.1 main chromosome]
+|| Example
 |-
-| Example || Example || Example || Example || Example
+| LB-2001 || B. miyamotoi (Northeast US) || Relapsing Fever ||
-|-
+* [http://www.ncbi.nlm.nih.gov/nuccore/CP006647.1 main chromosome]
-| Example || Example || Example || Example || Example
+|| Example
-|-
-| Example || Example || Example || Example || Example
-|-
-| Example || Example || Example || Example || Example
-|-
-| Example || Example || Example || Example || Example
-|-
-| Example || Example || Example || Example || Example
-|-
-| Example || Example || Example || Example || Example
-|-
-| Example || Example || Example || Example || Example
 |}