Year 2019: Difference between revisions
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imported>Lab |
imported>Lab |
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# Map gene names | # Map gene names | ||
# Cluster and show by interactive heatmaps in R | # Cluster and show by interactive heatmaps in R | ||
## [http://diverge.hunter.cuny.edu/~weigang/heatmap_td.html Heatmap 1. Scaled | ## [http://diverge.hunter.cuny.edu/~weigang/heatmap_td.html Heatmap 1. Scaled per row] | ||
## [http://diverge.hunter.cuny.edu/~weigang/heatmap_fc_td.html heatmap of top differentiately expressed genes (p<0.001, 1e-3). Values are Fold Change over mean Wild Tyoe] | ## [http://diverge.hunter.cuny.edu/~weigang/heatmap_fc_td.html heatmap of top differentiately expressed genes (p<0.001, 1e-3). Values are Fold Change over mean Wild Tyoe] | ||
Revision as of 21:20, 7 February 2019
TD Project
- Credit: Christopher Panlasigui
- Main computational steps:
- Quantile normalization between all replicates (with log2 transformatuon)
- Linear model among the 3 groups
- Select top significant genes
- Map gene names
- Cluster and show by interactive heatmaps in R