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<strong>Welcome to Dr Weigang Qiu's Lab Wiki | <strong>Welcome to Dr Weigang Qiu's Lab Wiki</strong> | ||
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Weigang Qiu, Ph.D., Professor<br> | Weigang Qiu, Ph.D., Professor<br> | ||
Department of Biological Sciences<br> | Department of Biological Sciences<br> | ||
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413 East 69th Street, New York, NY 10021<br> | 413 East 69th Street, New York, NY 10021<br> | ||
Office: 1-212-896-0445; Email: wqiu-at-(hunter.cuny.edu) | Office: 1-212-896-0445; Email: wqiu-at-(hunter.cuny.edu) | ||
[https://goo.gl/maps/xv1KmaW3XEnxaY1V7 Directions by Google Map] | |||
</center> | |||
== Lab publications (last update: March 20, 2023) == | == Lab publications (last update: March 20, 2023) == | ||
<gallery widths="200" perrow="4" caption="Lyme Genomics"> | <gallery widths="200" perrow="4" caption="Lyme Genomics"> | ||
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** [http://scholar.google.com/citations?hl=en&user=Ds6u39QAAAAJ) Google Scholar] | ** [http://scholar.google.com/citations?hl=en&user=Ds6u39QAAAAJ) Google Scholar] | ||
** [http://www.ncbi.nlm.nih.gov/sites/myncbi/weigang.qiu.1/bibliography/42770924/public/ NCBI Bibliography] | ** [http://www.ncbi.nlm.nih.gov/sites/myncbi/weigang.qiu.1/bibliography/42770924/public/ NCBI Bibliography] | ||
== Lab Resources == | |||
* [[Mini-Tutorals|Mini-Protocols]] (frequently used computer codes and pipelines) | |||
* [[Monte Carlo Club]] (summer projects) | |||
* T[[Tick protocol|ick handling protocols]] | |||
* [[A Primer on the Cluster System at Hunter|Hunter HPC Usage]] | |||
== Getting started == | == Getting started == | ||
Revision as of 21:05, 21 March 2023
Welcome to Dr Weigang Qiu's Lab Wiki
Weigang Qiu, Ph.D., Professor
Department of Biological Sciences
Hunter College of City University of New York
Belfer Research Building, Room 402
413 East 69th Street, New York, NY 10021
Office: 1-212-896-0445; Email: wqiu-at-(hunter.cuny.edu)
Directions by Google Map
Lab publications (last update: March 20, 2023)
- Lyme Genomics
Li, Di, Zeglis, Qiu (2022). “Evolution of the vls antigenic variability locus of the Lyme Disease pathogen and development of recombinant monoclonal antibodies targeting conserved VlsE epitopes”. Microbial Spectrum 10 (5):1-15. DOI: https://doi.org/10.1128/spectrum.01743-22
![Di*, Akther*, Bezrucenkovas, Ivanova, Sulkow, Wu, Mneimneh, Gomes-Solecki, Qiu (2021). "Maximum antigen diversification in a lyme bacterial population and evolutionary strategies to overcome pathogen diversity". The ISME Journal. 16, 447-464. [PMID 34413477] (*co-first authors)](/images/9/93/Fig7-small.png)
Di*, Akther*, Bezrucenkovas, Ivanova, Sulkow, Wu, Mneimneh, Gomes-Solecki, Qiu (2021). "Maximum antigen diversification in a lyme bacterial population and evolutionary strategies to overcome pathogen diversity". The ISME Journal. 16, 447-464. [PMID 34413477] (*co-first authors)
Schwartz, Margos, Casjens, Qiu, Eggers (2020). "Multipartite Genome of Lyme Disease Borrelia: Structure, Variation and Prophages". Current Issues in Molecular Biology. 42:409-454. DOI: https://doi.org/10.21775/9781913652616
Barbour & Qiu (2019). Borreliella. In Bergey's Manual of Systematics of Archaea and Bacteria (eds W. B. Whitman, F. Rainey, P. Kämpfer, M. Trujillo, J. Chun, P. DeVos, B. Hedlund and S. Dedysh). John Wiley & Sons, Inc., in association with Bergey's Manual Trust. DOI: https://doi.org/10.1002/9781118960608.gbm01525
![Di*, Akther*, Bezrucenkovas, Ivanova, Sulkow, Wu, Mneimneh, Gomes-Solecki, Qiu (2021). "Maximum antigen diversification in a lyme bacterial population and evolutionary strategies to overcome pathogen diversity". The ISME Journal. 16, 447-464. [PMID 34413477] (*co-first authors)](/w/File:Fig7-small.png)
- Evolution & Learning
Ely, Koh, Ho, Hassan, Pham, Qiu (2023). Novelty Search Promotes Antigenic Diversity in Microbial Pathogens. Pathogens 12:388. DOI: https://doi.org/10.3390/pathogens12030388
Attie, Sulkow, Di, Qiu (2019). Genetic codes optimized as a traveling salesman problem. PLoS ONE 14(10): e0224552. DOI: https://doi.org/10.1371/journal.pone.0224552
Yan, Deforet, Boyle, Rahman, Liang, Okegbe, Dietrich, Qiu, Xavier (2017). Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network. PLoS Comput Biol 13(8): e1005677. DOI: https://doi.org/10.1371/journal.pcbi.1005677
- Informatics Tools
![Hernandez, Bernstein, Pagan, Vargas, McCaig, Ramrattan, Akther, Larracuente, Di, Vieira, Qiu. (2018). BbWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines. BMC Bioinformatics 19(1):76. [PMID 29499649]](/images/a/a5/12859_2018_2074_Fig1_HTML.png)
Hernandez, Bernstein, Pagan, Vargas, McCaig, Ramrattan, Akther, Larracuente, Di, Vieira, Qiu. (2018). BbWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines. BMC Bioinformatics 19(1):76. [PMID 29499649]
![Di, Pagan, Packer, Martin, Akther, Ramrattan, Mongodin, Fraser, Schutzer, Luft, Casjens and Qiu. (2014). BorreliaBase: a phylogeny-centered browser of Borrelia genomes. BMC Bioinformatics 15:233. [PMID 24994456]](/images/8/8d/12859_2014_Article_6488_Fig3_HTML.png)
Di, Pagan, Packer, Martin, Akther, Ramrattan, Mongodin, Fraser, Schutzer, Luft, Casjens and Qiu. (2014). BorreliaBase: a phylogeny-centered browser of Borrelia genomes. BMC Bioinformatics 15:233. [PMID 24994456]
![Hernandez, Bernstein, Pagan, Vargas, McCaig, Ramrattan, Akther, Larracuente, Di, Vieira, Qiu. (2018). BbWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines. BMC Bioinformatics 19(1):76. [PMID 29499649]](/w/File:12859_2018_2074_Fig1_HTML.png)
![Di, Pagan, Packer, Martin, Akther, Ramrattan, Mongodin, Fraser, Schutzer, Luft, Casjens and Qiu. (2014). BorreliaBase: a phylogeny-centered browser of Borrelia genomes. BMC Bioinformatics 15:233. [PMID 24994456]](/w/File:12859_2014_Article_6488_Fig3_HTML.png)
- Full publication lists
Lab Resources
- Mini-Protocols (frequently used computer codes and pipelines)
- Monte Carlo Club (summer projects)
- Tick handling protocols
- Hunter HPC Usage
Getting started
- Configuration settings list
- MediaWiki FAQ
- MediaWiki release mailing list
- Localise MediaWiki for your language
- Learn how to combat spam on your wiki
- Consult the User's Guide for information on using the wiki software.