Hackathon 2020: Difference between revisions
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imported>Weigang (Created page with "=Participants= * Team 1 (Saymon, Raman). Sequences, Alignments, and phylogeny * Team 2 (Edgar, Lia). Web development * Team 3 (Brian, Chris). Epidemiology Shiny App =Links= =...") |
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'''Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak'''<br> | |||
* | Date & time: Saturday, Feb 8, 2020<br> | ||
* | Location: Belfer Research Building Room 422 | ||
</center> | |||
=Photos= | |||
<gallery mode=packed heights=200px> | |||
Image:Hackathon-3.jpg|Group shot | |||
Image: Hackathon-1.jpg|Team annotation:<br>Jerry, Desiree, Raman | |||
Image:Hackathon-4.jpg|Team Database & Website:<br>Saymon, Lia, Edgar | |||
</gallery> | |||
=Teams= | |||
* Genome collection: Edgar, Brian | |||
* Genbank file parsing: Edgar, Lia | |||
* Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen | |||
* Database and database tools: Saymon and Lia | |||
* Genome website development: Edgar & Lia | |||
* Epidemiology model & app development: Brian, Chris, Junho | |||
=Links= | =Links= | ||
= | # Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507 | ||
# ncoV website from nextstrain: https://nextstrain.org/ncov | |||
=GISAID download & preprosess= | |||
# Step 1 | |||
# Step 2 | |||
## Step 2.1 | |||
* Jan 30: Hackathon announced | * Jan 30: Hackathon announced | ||
* Feb 6 | * Feb 6 | ||
** Genome sequences downloaded and parsed (Edgar) | ** Genome sequences downloaded and parsed (Edgar) | ||
** Database design and population (Lia) | ** Database design and population (Lia) | ||
Latest revision as of 18:57, 9 March 2020
Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422
Photos
Group shot
Team annotation:
Jerry, Desiree, Raman
Team Database & Website:
Saymon, Lia, Edgar
Teams
- Genome collection: Edgar, Brian
- Genbank file parsing: Edgar, Lia
- Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
- Database and database tools: Saymon and Lia
- Genome website development: Edgar & Lia
- Epidemiology model & app development: Brian, Chris, Junho
Links
- Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
- ncoV website from nextstrain: https://nextstrain.org/ncov
GISAID download & preprosess
- Step 1
- Step 2
- Step 2.1
- Jan 30: Hackathon announced
- Feb 6
- Genome sequences downloaded and parsed (Edgar)
- Database design and population (Lia)