Latest revision as of 18:57, 9 March 2020

Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422

Photos

Jan 30: Hackathon announced
Feb 6
- Genome sequences downloaded and parsed (Edgar)
- Database design and population (Lia)

@@ Line 1: / Line 1: @@
-=Participants=
+<center>
-* Team 1 (Saymon, Raman). Sequences, Alignments, and phylogeny
+'''Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak'''<br>
-* Team 2 (Edgar, Lia). Web development
+Date & time: Saturday, Feb 8, 2020<br>
-* Team 3 (Brian, Chris). Epidemiology Shiny App
+Location: Belfer Research Building Room 422
+</center>
+=Photos=
+<gallery mode=packed heights=200px>
+Image:Hackathon-3.jpg|Group shot
+Image: Hackathon-1.jpg|Team annotation:<br>Jerry, Desiree, Raman
+Image:Hackathon-4.jpg|Team Database & Website:<br>Saymon, Lia, Edgar
+</gallery>
+=Teams=
+* Genome collection: Edgar, Brian
+* Genbank file parsing: Edgar, Lia
+* Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
+* Database and database tools: Saymon and Lia
+* Genome website development: Edgar & Lia
+* Epidemiology model & app development: Brian, Chris, Junho
 =Links=
 # Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
+# ncoV website from nextstrain: https://nextstrain.org/ncov
-=Preps=
+=GISAID download & preprosess=
+# Step 1
+# Step 2
+## Step 2.1
 * Jan 30: Hackathon announced
 * Feb 6
 ** Genome sequences downloaded and parsed (Edgar)
 ** Database design and population (Lia)