Hackathon 2020: Difference between revisions
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Image: Hackaton. | Image: Hackaton-1.jpg|Team annotation: Daniel, Girish, Pedro, Rayees, Raymond, Regina, Saymon, Weigang | ||
Image: | Image:Hackaton-2.jpg|Team Shiny App: Collecting ticks | ||
Image: | Image:Hackaton-3.jpg|Whole group | ||
</gallery> | </gallery> | ||
=Teams= | =Teams= | ||
* Genome collection: Edgar, Brian | * Genome collection: Edgar, Brian | ||
Revision as of 19:11, 8 February 2020
Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422
Photos
- Hackaton-1.jpg
Team annotation: Daniel, Girish, Pedro, Rayees, Raymond, Regina, Saymon, Weigang
- Hackaton-2.jpg
Team Shiny App: Collecting ticks
- Hackaton-3.jpg
Whole group
Teams
- Genome collection: Edgar, Brian
- Genbank file parsing: Edgar, Lia
- Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
- Database and database tools: Saymon and Lia
- Genome website development: Edgar & Lia
- Epidemiology model & app development: Brian, Chris, Junho
Links
- Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
- ncoV website from nextstrain: https://nextstrain.org/ncov
Preps
- Jan 30: Hackathon announced
- Feb 6
- Genome sequences downloaded and parsed (Edgar)
- Database design and population (Lia)