Hackathon 2020: Difference between revisions
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Image: Hackathon-1.jpg|Team annotation (Jerry, Desiree, Raman) | Image: Hackathon-1.jpg|Team annotation<br>(Jerry, Desiree, Raman) | ||
Image:Hackathon-2.jpg|Team Shiny App (Brian, Juno, Chris) | Image:Hackathon-2.jpg|Team Shiny App<br>(Brian, Juno, Chris) | ||
Image:Hackathon-4.jpg|Team Database/Genome Website (Saymon, Lia, Edgar) | Image:Hackathon-4.jpg|Team Database/Genome Website<br>(Saymon, Lia, Edgar) | ||
Image:Hackathon-3.jpg|Morning group shot | Image:Hackathon-3.jpg|Morning group shot | ||
</gallery> | </gallery> | ||
Revision as of 19:41, 8 February 2020
Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422
Photos
Team annotation
(Jerry, Desiree, Raman)
Team Shiny App
(Brian, Juno, Chris)
Team Database/Genome Website
(Saymon, Lia, Edgar)
Morning group shot
Teams
- Genome collection: Edgar, Brian
- Genbank file parsing: Edgar, Lia
- Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
- Database and database tools: Saymon and Lia
- Genome website development: Edgar & Lia
- Epidemiology model & app development: Brian, Chris, Junho
Links
- Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
- ncoV website from nextstrain: https://nextstrain.org/ncov
Preps
- Jan 30: Hackathon announced
- Feb 6
- Genome sequences downloaded and parsed (Edgar)
- Database design and population (Lia)