EEB BootCamp 2020: Difference between revisions
Jump to navigation
Jump to search
Bioinformatics Boot Camp for Ecology & Evolution: Pathogen Evolutionary Genomics
Thursday, Aug 6, 2020, 2 - 3:30pm
Instructors: Dr Weigang Qiu & Ms Saymon Akther
Email: weigang@genectr.hunter.cuny.edu
Lab Website: http://diverge.hunter.cuny.edu/labwiki/
imported>Weigang mNo edit summary |
imported>Weigang m (→Learning Goals) |
||
| Line 21: | Line 21: | ||
* [http://cov.genometracker.org Covid-19 Genome Tracker] | * [http://cov.genometracker.org Covid-19 Genome Tracker] | ||
==Learning Goals== | ==Bioinformatics Tools & Learning Goals== | ||
* BpWrapper: commandline tools for sequence, alignment, and tree manipulations (based on BioPerl). | * BpWrapper: commandline tools for sequence, alignment, and tree manipulations (based on BioPerl). | ||
** [https://github.com/bioperl/p5-bpwrapper Github Link] | ** [https://github.com/bioperl/p5-bpwrapper Github Link] | ||
Revision as of 06:50, 26 July 2020
| Lyme Disease (Borreliella) | CoV Genome Tracker | Coronavirus evolutuon |
|---|---|---|
Case studies from Qiu Lab
Bioinformatics Tools & Learning Goals
- BpWrapper: commandline tools for sequence, alignment, and tree manipulations (based on BioPerl).
- Haplotype network with TCS PubMed link
- Web-interactive visualization with D3js
Tutorial
- 2-2:30: Introduction on pathogen phylogenomics
- 2:30-2:45: data pre-processing with BpWrapper
- 2:45-3:00: build haplotype network with TCS
- 3:00-3:15: interactive visualization with BuTCS
- 3:15-3:30: Q & A