Year 2019: Difference between revisions
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=TD Project= | =TD Project= | ||
* Credit: Christopher Panlasigui | * Credit: Christopher Panlasigui | ||
* H[http://diverge.hunter.cuny.edu/~weigang/heatmap_td.html eatmap 1] | * Main computational steps: | ||
# Quantile normalization between all replicates (with log2 transformatuon) | |||
# Lienar model among the 3 groups | |||
# Select top significant genes | |||
# Map gene names | |||
# Cluster and show by interactive heatmaps in R | |||
## H[http://diverge.hunter.cuny.edu/~weigang/heatmap_td.html eatmap 1] | |||
## [http://diverge.hunter.cuny.edu/~weigang/heatmap_fc_td.html heatmap of top differentiately expressed genes (p<0.001, 1e-3). Values are Fold Change over mean Wild Tyoe] | |||
Revision as of 21:18, 7 February 2019
TD Project
- Credit: Christopher Panlasigui
- Main computational steps:
- Quantile normalization between all replicates (with log2 transformatuon)
- Lienar model among the 3 groups
- Select top significant genes
- Map gene names
- Cluster and show by interactive heatmaps in R