Year 2019: Difference between revisions
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imported>Weigang m (→TD Project) |
imported>Weigang m (→TD Project) |
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# Cluster and show by interactive heatmaps in R | # Cluster and show by interactive heatmaps in R | ||
* Results | * Results | ||
# | # [http://diverge.hunter.cuny.edu/~weigang/heatmap_td.html Heatmap 1. Scaled by gene] | ||
# [http://diverge.hunter.cuny.edu/~weigang/heatmap_fc_td.html heatmap of top differentiately expressed genes (p<0.001, 1e-3). Values are Fold Change over mean Wild Type] | |||
Revision as of 16:26, 8 February 2019
TD Project
- Credit: Christopher Panlasigui
- Brief computational/statistical steps:
- Quantile normalization between all replicates (with log2 transformatuon)
- Linear model among the 3 groups
- Select top significant genes
- Map gene names
- Cluster and show by interactive heatmaps in R
- Results