Hackathon 2020: Difference between revisions
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Image: Hackathon-1.jpg|Team annotation:<br>Jerry, Desiree, Raman | Image: Hackathon-1.jpg|Team annotation:<br>Jerry, Desiree, Raman | ||
Image:Hackathon-2.jpg|Team Shiny App:<br>Brian, Juno, Chris | Image:Hackathon-2.jpg|Team Epi-model & Shiny App:<br>Brian, Juno, Chris | ||
Image:Hackathon-4.jpg|Team Database | Image:Hackathon-4.jpg|Team Database & Website:<br>Saymon, Lia, Edgar | ||
Image:Hackathon-3.jpg|Morning group shot | Image:Hackathon-3.jpg|Morning group shot | ||
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Revision as of 19:42, 8 February 2020
Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422
Photos
Team annotation:
Jerry, Desiree, Raman
Team Epi-model & Shiny App:
Brian, Juno, Chris
Team Database & Website:
Saymon, Lia, Edgar
Morning group shot
Teams
- Genome collection: Edgar, Brian
- Genbank file parsing: Edgar, Lia
- Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
- Database and database tools: Saymon and Lia
- Genome website development: Edgar & Lia
- Epidemiology model & app development: Brian, Chris, Junho
Links
- Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
- ncoV website from nextstrain: https://nextstrain.org/ncov
Preps
- Jan 30: Hackathon announced
- Feb 6
- Genome sequences downloaded and parsed (Edgar)
- Database design and population (Lia)