NY-RaMP Mentoring: Difference between revisions

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=Cohort 1, August 2024 - June 2025=
=Cohort 1, August 2024 - June 2025=
==Readings and Practices==
* R/Rstudio Workshops
* Computing Skills for Biologists
* Akther et al (2024)
* Phylogenetics for the faint of heart
==Project 1. MDM2 proteomics (Collaboration with Bargonetti lab)==
# Data visualization
# Gene clustering
# Pathway enrichment analysis
# Shiny App
==Project 2. Borrelia vlsE database==
# Data extraction
# Gene trees
# vls Database
==Project 3. Borrelia pan-genomics==
# Data extraction
$ Pan-genome database

Revision as of 03:41, 8 September 2024

Cohort 1, August 2024 - June 2025

Readings and Practices

  • R/Rstudio Workshops
  • Computing Skills for Biologists
  • Akther et al (2024)
  • Phylogenetics for the faint of heart

Project 1. MDM2 proteomics (Collaboration with Bargonetti lab)

  1. Data visualization
  2. Gene clustering
  3. Pathway enrichment analysis
  4. Shiny App

Project 2. Borrelia vlsE database

  1. Data extraction
  2. Gene trees
  3. vls Database

Project 3. Borrelia pan-genomics

  1. Data extraction

$ Pan-genome database