Spombe

Results: Wednesday, October 16, 2013

Comparison of 4 Samples with Total mRNA

Title	Plot	Plot (scaled by gene)
Heatmap of 80 significant genes	File:Heatmap-80sig-genes-4sample.pdf	File:Heatmap-80sig-genes-4sample-scaled.pdf

Results: Friday, October 11, 2013

Comparison of all 10 Samples

Title	Plot	Plot (scaled by gene)
Barplot Nup 211	File:Nup211.pdf
Heatmap of 13 genes of interest	File:Heatmap-13interested-genes-10sample.pdf
Heatmap of 80 significant genes	File:Heatmap-80sig-genes.pdf	File:Heatmap-80sig-genes-scaled-by-gene.pdf
Heatmap of 39 genes of interest	File:Heatmap-39interested-genes.pdf	File:Heatmap-39interested-genes-scaled-by-gene.pdf

Results: Tuesday, October 8, 2013

Comparison between Samples 1,4,7, and 10

Title	Plots
Volcano Plots
Heatmap of 13 genes of interest	File:Heatmap-13interested-genes.pdf
Heatmap of 76 significant genes	File:Heatmap-76sig-genes.pdf

References

• Trapnell et al (2012). Nature Protocol. 7(2): 562.
  File:Texudo-pipeline-nprot.2012.016.pdf

  PDF
• Goff et al (2012). CummeRbund Manual
  File:CummeRbund-manual.pdf