Flhf aeruginosa PAML
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Paeruginosa_PA7_flhf ATG CAA GTC AAA CGC TTC TTT GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAT GCC GCG ATC CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAA CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAT CCG GCG CTG GAA GTG GAA CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCA CGC GCC GAA CTG ACG GCC CGG CCG GCG GAA AGC CAG CGC AAG GAT CGT CAA TTG TTC GCC GAG CAG AAG CCG GCG CGG CCA ACC CTC GCC GAG TCC ATG GCG GCG CCG CAG GCC AAG GCC GCG GCG GGC GGA CAG ACC CTG GAG GCG ATG CGC TTC GAG CTG AAC GGC CTG CGC GAA CTG ATC GAG GTG CAG CTG GGT TCG ATC GCC TGG GGC CAG TTG CAG CAT CAG CGC CCG CAG CAG GCC AAT CTT TGG CGC CGC CTG CAA CGC ATG GGC CTG CCG GCG GAG CTG AGC AAG CCG CTG CTG GAG CGA GTC GCC GCG GTG GGC GAT ACC CGC CAG GCC TGG CGC ATG CTC CTG GCA CAC CTG TCG CGC GCC GTG CCG ACG CCG GAC CAG GAC CCG CTC GAC GCC GGT GGC GTG CTG GCC CTG GTC GGC CCG GCC GGT GCC GGC AAG ACC ACC ACA CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCG CAG AGT CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGG CGA ATC CTC AAC GTG CCG GTG ACC CTG GTC GAC CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG CTG CTG ATC GAC ACC GCC GGC CTG CCG GCC AGC GAT CCG GCC CTG CGC ATG CAG CTC GAG GCT CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AGG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGC TGC ATC ATG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGA CTC CCG GTA GCC TAT CTG GCG GAC GGG CCG CGG ATT CCG GAC GAT CTG CAG GTG GCG CGC AGC CAC CAG CTG GTC AGC CGG GCG GTC AGC CTG CAG GCG CCG GAA GAA CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAT CAG CAA CCG GCG CGG CGT GTC GGC
Paeruginosa_PAO1_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAG TTG ACG GCG CGT CCG GCG GAA ACC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG ACC CTG GCC GAG TCC ATG ACG GCG GCG CAT GCC AAG CCC CAG GTG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_DK2_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGT CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATT GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAG TTG ACG GCG CGT CCG GCG GAA AAC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG ACC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
strain=39016_ ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGT CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAA TTG ACG GCG CGT CCG GCG GAA AAC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG TCC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAA CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_NCGM2.S1_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGT CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAA TTG ACG GCG CGT CCG GCG GAA AAC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG TCC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAA CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_UCBPP-PA14_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGT CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAA TTG ACG GCG CGT CCG GCG GAA AAC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG TCC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAA CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_C3719_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCA GAG GCG CGC GCC GAG TTG ACG GCG CGT CCG GCG GAA ACC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG TCC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGT GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_2192_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAG TTG ACG GCG CGT CCG GCG GAA ACC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG TCC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGT GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_LESB58_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCA GAG GCG CGC GCC GAG TTG ACG GCG CGT CCG GCG GAA ACC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG TCC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGT GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_PACS2_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAG TTG ACG GCG CGT CCG GCG GAA ACC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG TCC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGT GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Paeruginosa_M18_flhf ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG TTG GAT TAC CAG GCC CCG CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAG TTG ACG GCG CGT CCG GCG GAA ACC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT CCG ACC CTG GCC GAG TCC ATG ACG GCG GCG CAG GCC AAG CCC CAG GCG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Printing out site pattern counts
11 312 P
Paeruginosa_PA7_flhf AAA AAC AAG AAG AAT AAT ACA ACC ACC ACC ACG ACG ACT AGC AGC AGC AGG AGT ATC ATC ATC ATG ATG ATT CAA CAA CAC CAG CAG CAG CAG CAT CCA CCC CCG CCG CCG CCG CGA CGA CGC CGC CGC CGC CGG CGG CGT CTC CTC CTG CTG CTG CTG CTG CTT GAA GAA GAA GAC GAC GAC GAG GAG GAT GAT GCA GCC GCC GCC GCC GCC GCG GCG GCG GCG GCG GCG GCT GCT GGA GGC GGC GGG GGG GGT GGT GGT GTA GTC GTC GTC GTG GTG TAC TAT TAT TCC TCG TCG TGC TGG TTC TTG TTT
Paeruginosa_PAO1_flhf ... ... ... ... ..C ... ..C ... ... ..G ..C ... ... .C. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ..T G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ... ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ..G ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... .T. ..A ... ..C ... ..T ... ..T ..C ..C ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_DK2_flhf ... ... ... ... ..C ... ..C ... ... ..G ..C ... ... .A. ... ..T .A. ..C ... ..T ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ..T ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ..G ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ..C ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
strain=39016_ ... ... ..A ... ..C ... ..C ... T.. ..G ..C ... ... .A. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ..T ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ... ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ..C ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_NCGM2.S1_flhf ... ... ..A ... ..C ... ..C ... T.. ..G ..C ... ... .A. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ..T ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ... ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ..C ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_UCBPP-PA14_flhf ... ... ..A ... ..C ... ..C ... T.. ..G ..C ... ... .A. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ..T ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ... ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ..C ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_C3719_flhf ... ... ... ... ..C ... ..C ... T.. ..G ..C ... ... .C. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ... ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ..G ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ..A ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ... ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_2192_flhf ... ... ... ... ..C ... ..C ... T.. ..G ..C ... ... .C. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ... ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ..G ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ... ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_LESB58_flhf ... ... ... ... ..C ... ..C ... T.. ..G ..C ... ... .C. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ... ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ..G ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ..A ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ... ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_PACS2_flhf ... ... ... ... ..C ... ..C ... T.. ..G ..C ... ... .C. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ... ..G ..T ... ..T ... ... ..G ..C ... ... G.. T.. ..C ... ..G ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ... ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
Paeruginosa_M18_flhf ... ... ... ... ..C ... ..C ... ... ..G ..C ... ... .C. ... ..T .A. ..C ... ... ..T ... C.. ... ... ..G ... ..A ... ... G.. ..C ..G ... .A. ..C ... G.. ..G ..T ... ... ..G ..T ... ..T ... ... ..G ..C ... T.. G.. T.. ..C ... ..G ..G ... ..G ..T ..A ... ..C ... ..G C.. ..A ... ... ..G A.. CA. ..A ..C ... ... ..A ... ..C ... ..T ... ..T ..C ..C ... ... .C. ... ..G ..A ... ... ..C ... ... ..C ... ... ... ... ... ..C
2 4 1 12 1 2 1 11 1 1 1 1 1 1 12
1 1 1 10 1 1 15 1 1 3 1 3 2 25 1
1 1 1 3 1 1 22 1 2 1 16 1 1 3 7
2 2 10 2 1 34 1 1 5 1 5 1 4 7 1
3 1 12 4 3 2 1 2 1 29 2 1 1 2 1
24 1 1 1 1 17 1 3 1 1 1 3 1 1 8
1 3 9 6 1 2 1 1 5 2 3 4 2 1
CODONML (in paml version 4.4c, August 2010) flhf.paml
Model: One dN/dS ratio for branchesdGamma (ncatG=11)
Codon frequency model: Fcodon
Warning: Gamma model for codons. See documentation.Site-class models:
ns = 11 ls = 429
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------
Phe TTT 1 0 0 0 0 0 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 3 2 2 2 2 2 | Cys TGT 0 0 0 0 0 0
TTC 4 5 5 5 5 5 | TCC 1 2 2 3 3 3 | TAC 6 7 7 7 7 7 | TGC 2 2 2 2 2 2
Leu TTA 0 0 0 0 0 0 | TCA 0 0 0 0 0 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 7 7 7 7 7 | TCG 6 5 5 5 5 5 | TAG 0 0 0 0 0 0 | Trp TGG 3 3 3 3 3 3
--------------------------------------------------------------------------------------------------------------
Leu CTT 1 0 0 0 0 0 | Pro CCT 0 0 0 0 0 0 | His CAT 1 1 0 0 0 0 | Arg CGT 2 8 9 9 9 9
CTC 12 12 12 12 12 12 | CCC 3 5 5 5 5 5 | CAC 3 4 4 4 4 4 | CGC 21 17 16 16 16 16
CTA 0 0 0 0 0 0 | CCA 1 0 0 0 0 0 | Gln CAA 4 5 5 5 5 5 | CGA 3 0 0 0 0 0
CTG 42 38 38 38 38 38 | CCG 25 23 23 23 23 23 | CAG 29 28 29 29 29 29 | CGG 9 10 10 10 10 10
--------------------------------------------------------------------------------------------------------------
Ile ATT 1 2 3 2 2 2 | Thr ACT 1 1 1 1 1 1 | Asn AAT 3 2 2 2 2 2 | Ser AGT 1 1 1 1 1 1
ATC 12 11 10 11 11 11 | ACC 13 15 14 13 13 13 | AAC 4 5 6 6 6 6 | AGC 14 13 13 13 13 13
ATA 0 0 0 0 0 0 | ACA 1 0 0 0 0 0 | Lys AAA 2 2 2 3 3 3 | Arg AGA 0 0 0 0 0 0
Met ATG 16 15 15 15 15 15 | ACG 2 3 3 3 3 3 | AAG 13 14 14 13 13 13 | AGG 1 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------
Val GTT 0 0 0 0 0 0 | Ala GCT 2 1 1 1 1 1 | Asp GAT 7 6 6 6 6 6 | Gly GGT 5 5 5 5 5 5
GTC 10 8 8 8 8 8 | GCC 35 32 32 32 32 32 | GAC 11 11 11 11 11 11 | GGC 18 20 20 20 20 20
GTA 1 4 4 4 4 4 | GCA 2 5 5 5 5 5 | Glu GAA 10 6 6 7 7 7 | GGA 1 0 0 0 0 0
GTG 12 12 11 11 11 11 | GCG 30 29 30 30 30 30 | GAG 13 19 19 18 18 18 | GGG 4 3 3 3 3 3
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------
Phe TTT 0 0 0 0 0 | Ser TCT 0 0 0 0 0 | Tyr TAT 2 2 2 2 2 | Cys TGT 0 0 0 0 0
TTC 5 5 5 5 5 | TCC 3 3 3 3 2 | TAC 7 7 7 7 7 | TGC 2 2 2 2 2
Leu TTA 0 0 0 0 0 | TCA 0 0 0 0 0 | *** TAA 0 0 0 0 0 | *** TGA 0 0 0 0 0
TTG 7 7 7 7 8 | TCG 5 5 5 5 5 | TAG 0 0 0 0 0 | Trp TGG 3 3 3 3 3
--------------------------------------------------------------------------------------------------
Leu CTT 0 0 0 0 0 | Pro CCT 0 0 0 0 0 | His CAT 0 0 0 0 0 | Arg CGT 8 8 8 8 8
CTC 12 12 12 12 12 | CCC 5 5 5 5 5 | CAC 4 4 4 4 4 | CGC 17 17 17 17 17
CTA 0 0 0 0 0 | CCA 0 0 0 0 0 | Gln CAA 5 5 5 5 5 | CGA 0 0 0 0 0
CTG 38 38 38 38 37 | CCG 23 23 23 23 23 | CAG 29 29 29 29 29 | CGG 10 10 10 10 10
--------------------------------------------------------------------------------------------------
Ile ATT 2 2 2 2 2 | Thr ACT 1 1 1 1 1 | Asn AAT 2 2 2 2 2 | Ser AGT 1 1 1 1 1
ATC 11 11 11 11 11 | ACC 14 14 14 14 15 | AAC 5 5 5 5 5 | AGC 13 13 13 13 13
ATA 0 0 0 0 0 | ACA 0 0 0 0 0 | Lys AAA 2 2 2 2 2 | Arg AGA 0 0 0 0 0
Met ATG 15 15 15 15 15 | ACG 3 3 3 3 3 | AAG 14 14 14 14 14 | AGG 0 0 0 0 0
--------------------------------------------------------------------------------------------------
Val GTT 0 0 0 0 0 | Ala GCT 1 1 1 1 1 | Asp GAT 6 6 6 6 6 | Gly GGT 6 6 6 6 5
GTC 8 8 8 8 8 | GCC 31 32 31 32 32 | GAC 11 11 11 11 11 | GGC 19 19 19 19 20
GTA 4 4 4 4 4 | GCA 6 5 6 5 5 | Glu GAA 6 6 6 6 6 | GGA 0 0 0 0 0
GTG 11 11 11 11 11 | GCG 30 30 30 30 30 | GAG 19 19 19 19 19 | GGG 3 3 3 3 3
--------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: Paeruginosa_PA7_flhf
position 1: T:0.06527 C:0.36364 A:0.19580 G:0.37529
position 2: T:0.26573 C:0.28438 A:0.25408 G:0.19580
position 3: T:0.06527 C:0.39394 A:0.05828 G:0.48252
Average T:0.13209 C:0.34732 A:0.16939 G:0.35120
#2: Paeruginosa_PAO1_flhf
position 1: T:0.07692 C:0.35198 A:0.19580 G:0.37529
position 2: T:0.26573 C:0.28205 A:0.26107 G:0.19114
position 3: T:0.06760 C:0.39394 A:0.05128 G:0.48718
Average T:0.13675 C:0.34266 A:0.16939 G:0.35120
#3: Paeruginosa_DK2_flhf
position 1: T:0.07692 C:0.35198 A:0.19580 G:0.37529
position 2: T:0.26340 C:0.28205 A:0.26340 G:0.19114
position 3: T:0.06993 C:0.38928 A:0.05128 G:0.48951
Average T:0.13675 C:0.34110 A:0.17016 G:0.35198
#4: strain=39016_
position 1: T:0.07925 C:0.35198 A:0.19347 G:0.37529
position 2: T:0.26340 C:0.28205 A:0.26340 G:0.19114
position 3: T:0.06760 C:0.39161 A:0.05594 G:0.48485
Average T:0.13675 C:0.34188 A:0.17094 G:0.35043
#5: Paeruginosa_NCGM2.S1_flhf
position 1: T:0.07925 C:0.35198 A:0.19347 G:0.37529
position 2: T:0.26340 C:0.28205 A:0.26340 G:0.19114
position 3: T:0.06760 C:0.39161 A:0.05594 G:0.48485
Average T:0.13675 C:0.34188 A:0.17094 G:0.35043
#6: Paeruginosa_UCBPP-PA14_flhf
position 1: T:0.07925 C:0.35198 A:0.19347 G:0.37529
position 2: T:0.26340 C:0.28205 A:0.26340 G:0.19114
position 3: T:0.06760 C:0.39161 A:0.05594 G:0.48485
Average T:0.13675 C:0.34188 A:0.17094 G:0.35043
#7: Paeruginosa_C3719_flhf
position 1: T:0.07925 C:0.35198 A:0.19347 G:0.37529
position 2: T:0.26340 C:0.28438 A:0.26107 G:0.19114
position 3: T:0.06760 C:0.38928 A:0.05361 G:0.48951
Average T:0.13675 C:0.34188 A:0.16939 G:0.35198
#8: Paeruginosa_2192_flhf
position 1: T:0.07925 C:0.35198 A:0.19347 G:0.37529
position 2: T:0.26340 C:0.28438 A:0.26107 G:0.19114
position 3: T:0.06760 C:0.39161 A:0.05128 G:0.48951
Average T:0.13675 C:0.34266 A:0.16861 G:0.35198
#9: Paeruginosa_LESB58_flhf
position 1: T:0.07925 C:0.35198 A:0.19347 G:0.37529
position 2: T:0.26340 C:0.28438 A:0.26107 G:0.19114
position 3: T:0.06760 C:0.38928 A:0.05361 G:0.48951
Average T:0.13675 C:0.34188 A:0.16939 G:0.35198
#10: Paeruginosa_PACS2_flhf
position 1: T:0.07925 C:0.35198 A:0.19347 G:0.37529
position 2: T:0.26340 C:0.28438 A:0.26107 G:0.19114
position 3: T:0.06760 C:0.39161 A:0.05128 G:0.48951
Average T:0.13675 C:0.34266 A:0.16861 G:0.35198
#11: Paeruginosa_M18_flhf
position 1: T:0.07925 C:0.34965 A:0.19580 G:0.37529
position 2: T:0.26340 C:0.28438 A:0.26107 G:0.19114
position 3: T:0.06527 C:0.39394 A:0.05128 G:0.48951
Average T:0.13598 C:0.34266 A:0.16939 G:0.35198
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 1 | Ser S TCT 0 | Tyr Y TAT 23 | Cys C TGT 0
TTC 54 | TCC 28 | TAC 76 | TGC 22
Leu L TTA 0 | TCA 0 | *** * TAA 0 | *** * TGA 0
TTG 73 | TCG 56 | TAG 0 | Trp W TGG 33
------------------------------------------------------------------------------
Leu L CTT 1 | Pro P CCT 0 | His H CAT 2 | Arg R CGT 86
CTC 132 | CCC 53 | CAC 43 | CGC 187
CTA 0 | CCA 1 | Gln Q CAA 54 | CGA 3
CTG 421 | CCG 255 | CAG 318 | CGG 109
------------------------------------------------------------------------------
Ile I ATT 22 | Thr T ACT 11 | Asn N AAT 23 | Ser S AGT 11
ATC 121 | ACC 152 | AAC 58 | AGC 144
ATA 0 | ACA 1 | Lys K AAA 25 | Arg R AGA 0
Met M ATG 166 | ACG 32 | AAG 150 | AGG 1
------------------------------------------------------------------------------
Val V GTT 0 | Ala A GCT 12 | Asp D GAT 67 | Gly G GGT 59
GTC 90 | GCC 353 | GAC 121 | GGC 214
GTA 41 | GCA 54 | Glu E GAA 73 | GGA 1
GTG 123 | GCG 329 | GAG 200 | GGG 34
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.07756 C:0.35283 A:0.19432 G:0.37529
position 2: T:0.26383 C:0.28332 A:0.26128 G:0.19157
position 3: T:0.06739 C:0.39161 A:0.05361 G:0.48739
Average T:0.13626 C:0.34259 A:0.16974 G:0.35142
Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG):
0.00021191 0.01144310 0.00000000 0.01546938
0.00000000 0.00593346 0.00000000 0.01186692
0.00487391 0.01610511 0.00000000 0.00000000
0.00000000 0.00466200 0.00000000 0.00699301
0.00021191 0.02797203 0.00000000 0.08921382
0.00000000 0.01123119 0.00021191 0.05403687
0.00042382 0.00911210 0.01144310 0.06738716
0.01822420 0.03962704 0.00063573 0.02309811
0.00466200 0.02564103 0.00000000 0.03517694
0.00233100 0.03221021 0.00021191 0.00678110
0.00487391 0.01229074 0.00529773 0.03178640
0.00233100 0.03051494 0.00000000 0.00021191
0.00000000 0.01907184 0.00868828 0.02606484
0.00254291 0.07480398 0.01144310 0.06971816
0.01419792 0.02564103 0.01546938 0.04238186
0.01250265 0.04534859 0.00021191 0.00720492
Nei & Gojobori 1986. dN/dS (dN, dS)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)
Paeruginosa_PA7_flhf
Paeruginosa_PAO1_flhf 0.0723 (0.0161 0.2221)
Paeruginosa_DK2_flhf 0.0604 (0.0139 0.2302) 0.5403 (0.0032 0.0059)
strain=39016_ 0.0662 (0.0150 0.2263) 0.4797 (0.0042 0.0088) 0.1195 (0.0011 0.0089)
Paeruginosa_NCGM2.S1_flhf 0.0662 (0.0150 0.2263) 0.4797 (0.0042 0.0088) 0.1195 (0.0011 0.0089)-1.0000 (0.0000 0.0000)
Paeruginosa_UCBPP-PA14_flhf 0.0662 (0.0150 0.2263) 0.4797 (0.0042 0.0088) 0.1195 (0.0011 0.0089)-1.0000 (0.0000 0.0000)-1.0000 (0.0000 0.0000)
Paeruginosa_C3719_flhf 0.0675 (0.0150 0.2221) 0.5411 (0.0032 0.0059) 0.1793 (0.0021 0.0118) 0.0715 (0.0011 0.0148) 0.0715 (0.0011 0.0148) 0.0715 (0.0011 0.0148)
Paeruginosa_2192_flhf 0.0687 (0.0150 0.2182) 1.0843 (0.0032 0.0029) 0.2395 (0.0021 0.0088) 0.0896 (0.0011 0.0118) 0.0896 (0.0011 0.0118) 0.0896 (0.0011 0.0118) 0.0000 (0.0000 0.0029)
Paeruginosa_LESB58_flhf 0.0675 (0.0150 0.2221) 0.5411 (0.0032 0.0059) 0.1793 (0.0021 0.0118) 0.0715 (0.0011 0.0148) 0.0715 (0.0011 0.0148) 0.0715 (0.0011 0.0148)-1.0000 (0.0000 0.0000) 0.0000 (0.0000 0.0029)
Paeruginosa_PACS2_flhf 0.0687 (0.0150 0.2182) 1.0843 (0.0032 0.0029) 0.2395 (0.0021 0.0088) 0.0896 (0.0011 0.0118) 0.0896 (0.0011 0.0118) 0.0896 (0.0011 0.0118) 0.0000 (0.0000 0.0029)-1.0000 (0.0000 0.0000) 0.0000 (0.0000 0.0029)
Paeruginosa_M18_flhf 0.0614 (0.0139 0.2262) 0.7215 (0.0021 0.0029) 0.1195 (0.0011 0.0088) 0.1791 (0.0021 0.0118) 0.1791 (0.0021 0.0118) 0.1791 (0.0021 0.0118) 0.1197 (0.0011 0.0088) 0.1799 (0.0011 0.0059) 0.1197 (0.0011 0.0088) 0.1799 (0.0011 0.0059)
Model 0: one-ratio