FlhF-corrected PAML
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seed used = 1194827681
Before deleting alignment gaps
10 1356
Pstutzeri_DSM ATG CAG GTC AAA CGT TTC TTC GCT GCC GAC ATG CGG ATC GCC ATG AAA ATG GTG CGT GAC GAG TTG GGC GCG GAT GCC GCC ATA GTC GGC AAT CGC CGG GTT GCC GGC GGC GTC GAG CTG ACC GCT GTG CTC GAT TAT CCG ATG GAA CCC GCC ACG CCT CAC CGT GCC AAC CCG GCG CTG GAG GCC GAG TTG CGC AAG ACT CAG GCG CGC ATC GCC AGT GCC CAT GCC GAA CTG AGC CAG CCG --- --- --- GTT GTC GCC CAG GCG GCA AAG AAT CGC CAG GTG CAG GAT GAG AAA --- --- --- --- --- --- CCT GCA ACC GGC ACC GCG TTG CCG GAG CAG --- --- --- --- --- --- --- --- --- --- --- --- AAG CCT GCA CCT GCC GCG --- --- --- --- CTG GAC CCG CGT GCC CTG GAA GCC ATG TAC AGC GAG CTG CAC GGT TTG CGC GAG CTG ATC GAA GTG CAG CTG GGC TCG ATT GCC TGG GGC CAG GAG CAG AGC CGT CGC CCG CAG CAG GCC GGC CTC TGG CGC AAA CTG CAG CGT ATC GGG TTG CCG GCC GAG CAG TCG CGC AGC CTG CTG GAA AAG GTC TCG ACC ATC GAC GAC CCG CGC CAG GCC TGG CGG ATG CTG CTG GCG CAC CTG GCG CAG TCC ATC AAG GTC AGC AAG GTC GAA CCG CTG GAG CAG GGC GGC GTC ATC GCG CTG GTG GGT ATG GCC GGT GTC GGC AAG ACC ACC ACG CTG GCG AAG CTG GCG GCG CGC TAT GTC CTC AAG TAC GGC TCG CAG AAT ATT GCG GTG GCC AGC ATG GAC AAT TAC CGC ATC GGT GCT CAG GAA CAA CTG AAG ACC CTC GGC CGC ATC CTC GAT ATC CCG GTG GTC CAG ATC GAC CCG AGC CAG CCG CTG AGC AAG TCG CTG GCG CCG CTT GCG CGC AAG CGC GTG GTG TTG ATC GAT ACC GCC GGT CTG CCG GCC AGC GAT CCG ATG CTG CGC ATG CAG CTC GAG GCG CTG TCC GAC AAG GGA ATC CAG TCG AAG AAT TAT CTG GTG CTG GCG GCG ACT AGC CAG AGC CAG GTG CTC AAG GCT TCG TGG CAC AAC TAC CGG CGT TGC GGC CTG GCG GGC TGC ATT CTG ACT AAA CTG GAT GAA GCC GGG AGC CTG GGT GAT GTT CTG GGG CTA ACG ATT GGC CAG CAT CTG CCG ATA GCC TAT CTC GGT GAC GGT CCG CGT ATT CCG GAT GAC CTG CAT CTG CCG CGC AGT CAC CAG TTG GTC AGC CGA GCG GTG AGC CTG CAG GCC GGG GAG GCC CCG AGC GAG GAA GCC ATG GCC GAT ATG TTC GCC GGG CTG TAC AGC AAT GCT TCG CGG CAG GCC GGG
Pputida_GB-1_flhF ATG CAA GTT AAG CGA TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAG CTG GTC CGT GAC GAG CTG GGC GCC GAT GCC GCG ATC ATA GGC AAC CGC CGC ATT GCC GGT GGT GTC GAA CTG ACG GCC GCG CTG GAC TAC AAG CTG TCC GCC CTG GCC CCG CGC GTG CCC AAC GCC GAG CTG GAA GAA GAG CTG CGC AAG ACC CAT ACG CGC ATC GCC ACT GCC CAG GCC GAG CTG GAC CAC CGT --- --- --- --- CAG GAC AGC AGC GAC AAC AAC CGC CAA TTG TTC GCC GGG CAG --- --- --- --- --- --- TCG TTG ACC GCT GCC GAA CCG TTG ATC GAG CCG --- CAC GTC GAT ACC CCT GAG GTT --- --- --- GCC GCT GCG CCG GCT GCC GCA CCG --- --- GTC GAC CCG CGC CTG TTC GAT GCC ATG CGC TCC GAG CTG TCG GGC CTG CGC GAG CTG CTG GAA GTG CAG CTC GGC TCG CTG GCC TGG ACC CAG TTG CAG GGC AGC AAG CCG CAG CAG GCC AAC CTT TGG CGC CGC CTG CAG CGC ATC GGC TTG TCC GGG CCT ATC GCC CGC GAG CTG CTG GAC CTC ACC GCC GAG ATC GAA GAG CCG CGC CAG GCT TGG CGC ATG CTG CTG GCG CAC CTG GCA CGG ATG ATC GAG ATT CCT GAA ATC GAG CCG ATC GAA GAG GGC GGG GTC ATC GCC ATG GTC GGC CCG GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTG GCT GCG CGC TAC GTG CTC AAG TAC GGC GCG CAG AAC CTG GCG CTG GTG AGC ATG GAC AGC TTC CGT ATC GGC GCT CAG GAG CAG CTC AAG ACC CTC GGT CGC ATT CTC AAT GTG CCG GTG ACC TAC GTC GAC CCA GGC CAG TCG CTG GCA GCC GCG CTG GAG CCG TTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGC CTG CAG GCC AGC GAC CCG GCG CTG CGC ATG CAG CTG GAA ACC CTG GCC GGG CGT GGC ATC GCC GCT AAG AAT TAC CTG GTG CTG GCT ACC ACT AGC CAG AAG CAG GTG CTG ACC GCT GCC TAC CAC AGC TAC AAG CGT TGT GGC CTG GCC GGC TGC ATC CTG ACC AAA CTC GAT GAA ACG GCA AGC CTT GGC GAC GTG CTG AGC CTT GCC ATC AGT CAT GAA CTG CCC GTG GCC TAC CTT ACC GAT GGC CCG CGC ATT CCT GAC GAC CTG CAC CTG CCG CGG GGC CAC CAA CTG GTC ACC CGC GCG GTA AAT GTG CAG CAG CAG GAC GAG CCC AGC GAA GAG GCC ATG GCC GAC ATG TTC GCT GAT CTC TAT CAC AAC CCA --- CGG CGA GCG GGT
Pentomophila_L48_flhF ATG CAA GTT AAG CGT TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAG CTG GTC CGG GAT GAG CTC GGC TCC GAC GCC GCC ATC ATC GGC AAC CGG CGC ATC GCT GGC GGT GTC GAG TTG ACG GCC GCG CTG GAC TAC AAG CTG TCC GCC CTG GCC CCA CGC GTA CCC AAC GCC GAG CTC GAG GAC GAG TTG CGC AAG ACG CAG TCG CGC ATC GTC ACC GCC CAG GCG CAG ATC AAT GAT CGC --- --- --- AGT GAG CTG GGC GAG GGT --- AAC CGC CAG CTG TTC GCC GGT CAG --- --- --- --- --- --- TCG CTG ACG GCC TCC GAG CCG CTG GTC GAG CCT --- CAT GTC GAT GAG CCG GCG CCA --- --- --- GTC GCC GCG CCC CCG CAG CCG GCG --- --- GTA GAC CCG CGC CTG TTC GAC GCC ATG CGC TTC GAG CTG ACC GGC CTG CGT GAG CTG CTT GAA GTA CAA CTT GGC TCG CTG GCC TGG AGC CAG TTG CAG GGC AGC AAG CCG CAG CAG GCC AAC CTC TGG CGT CGC CTG CAG CGC CTG GGC CTC TCC GGT GGC CTG GCG CGC GAA CTG CTC GAG CTC ACG GCT GAA ATC GAA GAG CCG CGT CAA GCC TGG CGC ATG GTG CTG GCG CAC CTG GCG CGC ATG ATC GAA GTA CCC GAG ATC GAG CCG ATC GAG GAG GGC GGA GTG ATC GCC ATG GTC GGC CCG GCC GGC ATG GGC AAG ACC ACC ACG CTG GCC AAG CTG GCC GCC CGT TAC GTA CTC AAG TAC GGC GCG AAC AAC CTG GCG CTG GTC AGC ATG GAC AGC TAC CGC ATT GGC GCC CAG GAG CAG CTC AAG ACC CTT GGG CGC ATC CTC AAC GTG CCG GTC ACC TAC GTC GAC CCG GGC GAG TCG CTG GCC CAG GCC CTC GAG CCC CTG CTG CGC AAG CGC GTG GTG CTG ATC GAC ACC GCC GGC CTG CAG GCC AGC GAC CCG GCC CTG CGC ATG CAG CTG GAG ACG CTG GCC GGG CGC GGC ATC GCC GCC AAG AAC TAC CTG GTG CTG GCA ACC ACC AGC CAG AAG CAG GTG CTT ACC GCC GCC TAC CAC AGC TAC AAG CGC TGC GGC CTG GCC GGT TGC ATC CTG ACC AAA CTC GAT GAA ACG GCT TGC CTC GGC GAA GTG CTG AGC CTG GCC ATC AGT CAT GAA TTG CCG GTG GCC TAC CTG ACC GAC GGG CCA CGT ATT CCT GAC GAC CTG CAA TTG CCG CGC AAG CAC CAG CTG GTG AGC CGC GCG GTA AGC GTA CAG ATG CAG GAC GAG CCC AGC GAA GAG GCC ATG GCC GAC ATG TTC GCT GAT CTC TAC CAC AAC CCT GGC AAG CGT GCG GGT
Psyringae_DC3000_flhF ATG CAA GTT AAG CGA TTT TTC GCC GCC GAT ATG CGT CAA GCC ATG AAA CTG GTT CGC GAT GAG CTG GGC GCC GAG GCG GCC ATC ATC GGT AAC CGG CGC ATT GCC GGT GGC GTA GAG CTG ACT GCC GCT CTG GAT TAC AAG CTG TCT GCC CTG GCG CCG CGT GTG CCG AAT ATG GAA CTC GAA GAC GAG CTG CGC AAG ACT CAG TCG CGC ATC GTC TCC GCT CAG GCC GAA CTG AAC AAC CGT --- --- --- AGC GAC AGC GAT GCG TCG ATC AAC CTT CAG CTG TTT TCC GGC AAG --- --- --- --- --- --- CCG GTC AGT GCT GCC GAC ACG CAT ATC GAA CCG ACG CTC GAA GAG CCG CCA CGC CCG TTT GCC TAC GCT CCC GCA CCG GCT GCA GAG CCT --- GCT GGC GGT CAG CGT GCC TTT GAC TCG ATG CGC TCT GAA TTG AAC GGC CTG CGC GAG CTG CTG GAA GTC CAG CTC GGC TCC CTT GCC TGG AAC CAG CTA CAA GGC AGC CGT CCG CAG CAG GCC AAC CTG TGG CGC CGT CTG CAA CGC GTC GGC CTG TCC GGC CCG CTG TCT CGC GAT CTG CTG TCG ATG ATC CCG GAC ATC GAC GAG CCT CGT CAG GCC TGG CGC ATG TTG CTG GCC CAT CTG GCC CGC ATG ATT GCT GTA CCG GAC ATC GAG CCG CTG GAA GAG GGC GGA GTG ATT GCC ATG GTC GGT CCT GCC GGT ATG GGC AAG ACC ACC ACT CTG GCC AAA CTG GCG GCA CGT TAT GTG TTG AAG TAC GGC CCG CAG AAT ATC GCC CTG GTC AGT ATG GAC AGT TTC CGC ATC GGC GCG CAG GAA CAG CTC AAG ACT CTT GGG CGC ATC CTC AAC GTG CCG GTC ACC CAT GTC GAT CCG GGC CAG TCG CTG GTT CAG GCG CTG GAG CCT TTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGG CTG CAG GCC AGT GAT CCT GCG CTG CGC ATG CAG CTT GAA AGC CTG GCA GGG CGC GGC ATC AAA TCA CGT AAC TAC CTG GTG CTG GCG ACG ACC AGC CAG AAG CAG GTG CTG ACC GCT GCG TAT CAC AGT TAC AAA CGG TGT GGC CTG GCC GGA TGC ATT CTG ACC AAG CTT GAT GAA ACA GCC AGC CTG GGC GAA GTC CTG AGC CTG GCG ATC AGT CAC GAG TTA CCG GTG GCC TAC CTC ACG GAC GGT CCA CGT ATT CCT GAT GAC CTG CAC ACT CCA CGA CGT CAT CAA CTG GTG AGT CGT GCG GTG AGT GTG CAG ATG CAG GAT GAG CCT AGC GAG GAA GCG ATG GCG GAT ATG TTT GCT GAC CTC TAT CAC ACC CCT GGC AAG AGA GTG GGT
Pfluorescens_A506_flhF ATG CAA GTT AAG CGT TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAG TTG GTC CGC GAT GAG CTG GGC GCC GAT GCC GCG ATT ATC GGT AAC CGT CGG ATT GCC GGC GGT GTC GAG CTG ACG GCT GCC CTG GAT TAC ACG CCC CAG GCG CTG GCC CCG CGC GTG CCG AAC ATG GAA CTC GAA GAC GAG CTG CGC AAG ACC GCC TCG CGC ATT GTA TCG GCC CAG GCT GAA CTG AGC ATG CGC --- --- --- GGT GAC AGC GAT GCC AGC ACC AAT CGC CAA TTA TTC GCC GGC CTG --- --- --- --- --- --- CCG CTG ACC GCC GCC GAG CCG CTG GTT GAG CCC ACC TTT GTC GAA CCG CCG CGT CCT GCA --- --- GCG CCT GCC CCG GCC GCC GCA --- --- --- GTT GAC CAG CGT GTG ATC GAC TCG ATG CGC TTT GAA CTC AGT GGC CTG CGC GAA TTG CTC GAA GTG CAG CTG GGC TCG TTG GCC TGG ACT CAG TTG CAA GGC AGC AAG CCG CAG CAA GCC AAC CTG TGG CGT CGC TTG CAG CGC ATC GGC CTG TCC GGC CCG TTG TCC CGC GAC CTG CTG GCC TTG ACC GCC GAA GTC GAA GAA CCT CGT CAG GCC TGG CGC ATG TTG CTG GCG CAT CTG GCG CGC ATG ATC GCC ACG CCG GAA ATC GAA CCC CTG GAA GAG GGC GGT GTG ATC GCC ATG GTC GGC CCC GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTG GCC GCC CGT TAT GTG CTT AAG TAC GGC GCA CAG AAT ATC GCG TTG GTG AGC ATG GAC AGC TAC CGC ATC GGC GCC CAG GAG CAG CTC AAG ACC CTG GGC CGC ATT CTC AAC GTG CCG GTG ACC CAT GTC GAC CCG GGC CAG TCC CTG GCC AAT GCC CTC GAG CCG TTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGC CTG CAA GCC AGT GAT CCA GCG CTG CGC ATG CAG CTC GAA AGC CTG GCC GGG CGT GGC ATC AAG TCG AAA AAT TAC CTG GTG CTT GCA ACC ACC AGC CAG AAA CAG GTT CTT ACC GCT GCC TAT CAC AGC TAC AAG CGT TGC GGC CTG GCC GGC TGC ATC CTC ACC AAA CTC GAC GAA ACC GCG AGC CTG GGC GAG GTA TTG AGC CTG GCC ATC AGC CAT GAA TTA CCG GTT GCC TAC CTC ACC GAC GGG CCG CGG ATC CCG GAT GAT CTG CAT CTG CCG CGC CGT CAT CAG TTG GTC AGC CGT GCC GTG AGT GTG CAA ATG CAA GAC GAG CCT AGC GAG GAA GCG ATG GCC GAT ATG TTC GCC GAC CTT TAC CAC CAC CCG GCT AAA CGG GTG GGT
Pbrassicacearum_NFM421_flhF ATG CAA GTG AAG CGT TTT TTC GCC GCC GAC ATG CGT CAG GCC ATG AAA CTG GTT CGT GAC GAG CTG GGC GCT GAA GCA GCC ATC ATT GGC AAC CGT CGT ATC GCC GGC GGT GTC GAG CTG ACG GCG GCC CTG GAT TAC AAA CTG TCT GCG CTG GCC CCG CGG GTT CCG AAC ATG GAA CTC GAA GAT GAG CTG CGC AAG ACT CAA TCG CGC ATC GCC AGC GCC CAG GCC GAG CTG AGC CTG CGC AGC AGT GAA GGC GAG GCC GCG GCA GGC ACC AAT CGT CAA TTG TTC GCC GGT CAG CCG CTG ACG GCC GGC CTG CCG TTG ACG GCT GCC GAA CCG CTG ATC GAG CAG GCC CAC GCC GAA CCG CGT CGT CCT --- --- --- GAG CCG GCG CCC GCG GCG CCT GCC CGG GGT GTC GAT CCG CGC GCC CTG GAC TCG ATG CGC TTT GAA CTC AAC AGC CTG CGC GAG CTG ATG GAA GTC CAG CTC GGC TCC CTG GCC TGG AAC CAG CTG CAA GGC AGC CGT CCA GCC CAG GCC AAC CTG TGG CGT CGC CTG CAA CGC ATC GGC CTG TCC GGC CCG TTG TCC CGG GAC CTG CTG GCG CTG ATC AAT GGT ATC GAA GAG CCT CGC CAG GCC TGG CGC ATG TTG CTG GCG CAC CTG GCG CGG ATG ATC GCG ACC CCG GAA GTC GAG CCG CTG GAA GAA GGC GGG GTA ATT GCC ATG GTC GGT CCT GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTC GCC GCC CGT TAT GTA CTC AAG TAC GGC GCC CAG AGC ATT GCC CTG GTG AGC ATG GAC AGT TTC CGC ATC GGT GCC CAG GAG CAA CTC AAG ACC CTC GGC CGG ATC CTC AAT GTG TCG GTG ACC CAT GTG GAT CCG GGC CAG TCC CTG GCC CAG GCG CTG GAG CCG CTG CTG CGC AAA CGC GTC GTG CTG ATC GAT ACC GCA GGC CTG CAA GCC AGC GAT CCA GCC CTG CGC ATG CAG CTC GAA AGC CTG GCC GGA CGC GGT ATC AAG TCA AAA AAT TAT CTC GTG TTG GCA ACC ACC AGC CAG AAA CAG GTT CTA ACC GCC GCA TAC CAC AGC TAC AAA CGC TGC GGG CTG GCC GGC TGC ATC CTG ACT AAG CTG GAC GAA ACG GCA AGC CTG GGC GAG GTG TTG AGC CTG GCG ATC GGT CAT GAA TTA CCG GTG GCC TAC CTG ACC GAC GGG CCG CGG ATC CCG GAT GAT TTG CAT CTG CCG CGC CGT CAT CAA CTG GTC AGT CGT GCC GTG AGT GTG CAA ATG CAG GAA GAA CCC AGC GAA GAA GCC ATG GCT GAT ATG TTC GCT GAT ATC TAC CAC AGC CCG ACC AAG CAG GTC GGC
Pprotegens_Pf-5_flhF ATG CAA GTT AAG CGT TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAA CTG GTT CGT GAT GAG TTG GGC GCT GAA GCC GCC ATC ATC GGC AAC CGG CGG ATC GCC GGC GGT GTC GAG CTG ACG GCT GCG CTG GAT TAC AAG TTG TCG GCC TTG TCG CCA CGG GTT CCG AAC ATG GAA CTC GAG GAC GAG CTG CGC AAG ACC CAG TCG CGG ATT GTC ACC GCC CAG GCT GAA CTG AGC CTG CGG --- GGC GAG GGC GAC AGT GCC TCG ATC ACC AAT CGC CAG CTG TTC GCC GGC CTG --- --- --- --- --- --- CCG TTG ACC GCG GCC GAG CCC CTG ATC GAG CCG ACC CTG ACC GAG CGT CCG CGC CCG --- --- --- GCG CCG GCT CCA GCA GCG CCA CCT --- --- GCC GAT ACG CGG GCG CTG GAC TCG ATG CGT TTC GAG CTC AAC GGT CTG CGC GAA CTG CTG GAA GTG CAG CTC GGC TCC CTG GCC TGG AGC CAA TTG CAG GGC AGC CGT CCG GAG CAG GCC AAC CTC TGG CGT CGC CTG CAG CGC ATC GGC CTG TCG GGC CCG CTG GCC CGT GAC CTG CTG GCA CTG ATT ACC GAA ATC AAC GAA CCC CGT CAG GCC TGG CGC ATG TTG CTG GCG CAC CTG GCG CGA ATG ATC CAG ACC CCG GAA GTC GAG CCT CTG GAA GAG GGC GGT GTG ATC GCC ATG GTC GGC CCG GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTG GCG GCG CGC TAC GTG CTC AAG TAC GGG GCG CAG AAC ATT GCC CTG GTG AGC ATG GAC AGC TAC CGC ATC GGC GCC CAG GAG CAG CTC AAG ACC CTG GGG CGC ATC CTC AAT GTG TCG GTG ACC CAT GTG GAC CCG GGC CAG TCC CTG GCC CAG GCA CTG GAT CCG CTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGC CTG CAG GCC AGC GAT CCG GCG TTG CGC ATG CAA CTG GAG AGC CTG GCC GGT CGT GGC ATT CGT GCG AAG AAC TAT CTG GTA CTG GCT ACC ACC AGC CAG AAA CAG GTG CTG ACC GCC GCC TAC CAC AGC TAC AAA CGC TGC GGC CTG GCC GGT TGC ATC CTG ACT AAA CTT GAT GAA ACA GCC AGT CTT GGC GAA GTG TTG AGC CTG GCT ATC AGT CAT GAA CTG CCG GTT GCC TAT CTC ACT GAT GGT CCG CGG ATT CCT GAC GAT CTG CAC CTG CCT CGC CGG CAT CAG CTG GTG AGT CGC GCG GTA AGC GTA CAG ATG CAG GAA GAA CCC AGC GAG GAA GCC ATG GCC GAC ATG TTC GCT GAC CTT TAC CAC AGC CCG TCC AAA CGG GTT GGC
Paeruginosa_PAO1_flhF ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG CCG --- GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAG TTG ACG GCG CGT --- --- --- CCG GCG GAA ACC CAG CGC AAG GAC CGT CAA TTG TTC GCC GAG GAG --- --- --- --- --- --- --- --- --- --- --- --- AAG CCG GCG CGT CCG ACC CTG GCC GAG TCC ATG --- --- --- --- --- ACG GCG GCG CAT GCC AAG CCC CAG --- --- GTG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG GCG CGG CGT GCC GGC
Pmendocina_NK-01_flhF ATG CAG GTC AAA CGC TTC TTC GCC GCC GAT ATG CGG ACC GCC ATG AAA CTG GTG CGT GAC GAA TTG GGC GCT GAT GCC TCG ATC ATC GGC AAT CGC CGC GTT GCC GGT GGC GTC GAG CTG ACT GCT GCG CTG GAT TAC CAG GCG CCG --- --- ACG CCG GTA CGC CCG AAC CCG GCA CTG GAA GCC GAA TTG CGC AAG ACC CAG GCG CGC ATC GCC AGC GCC CAG GCC GAG CTG ACC ACC CGT --- --- --- GCC GAG CAG GAT GCC GGT AAG GAC CGT CAG CTG TTC GCC AAT GAA --- --- --- --- --- --- TCC TTG TTG GCA CCG GAG CTG CCG GCG ACT CCG GTC AAG CCG CAG CGC CCG GTC GAG --- --- --- GCC GTA GCG CCT GCT ACG CCG CCG --- --- GTC GAT CCA CGT GCG CTG GAT GCC ATG CGC TTC GAG CTC AAC GGC CTG CGT GAG CTG ATC GAA GTG CAA CTG GGC TCC ATT GCC TGG GGG CAA CTG CAG AAC CGC CGC CCG CAA CAA GCC AAT CTG TGG CGT CGC CTA CAG CGC ATG GGG CTG TCC GCC GAA TTG ACC CAA GCG CTG CTG GGC AAG GTC GCG GGC GTG GCC GAG CCT CGT CAG GCC TGG CGC ATG CTG CTG GCG CAC CTG GCT CAT GCG ATC AAA ACG CCC AAG GTC GAG CCG CTG GAA GAG GGC GGA GTG ATC GCG CTG GTC GGT CCT GCC GGC ATG GGC AAG ACC ACT ACT CTG GCC AAG CTG GCC GCC CGC TAC GTG CTT AAG TAC GGC GCG CAA CAG GTC GCT CTG GTG AGC ATG GAC AGC TTT CGT ATC GGT GCG CAG GAG CAG CTC AAG ACG CTC GGG CGT ATC CTT GGC GTT TCG GTG ACC CAG ATC GAC CCC GGT CAG TCT CTG CTG CAG GCT TTG GCC CCG CTG GCC AAG AAG CGC GTG GTG CTG GTC GAT ACT GCC GGC TTG CCG GGT AAC GAT CCG GCG CTG CGC CTG CAG CTG GAA AGC CTG GCC TCG GCA CGC ATC AAG GCG AAG AAT TAT CTG GTA CTG GCG GCA ACA AGT CAG AGC CAA GTG CTC AAG GCG GCC TAC CAT AGT TAT AAG CGT TGT GGT CTC GCA GGC TGC ATA CTG ACG AAA CTG GAT GAG GCG GCG AGC CTG GGC GAG GTT TTA GGT CTG GCT ATA GGC CAG CAA CTG CCG GTA GCC TAT GTC ACA GAC GGG CCG CGG ATC CCT GAT GAT CTG CAA GTG CCG CGC AGC CAT CAA CTG GTT AGC CGT GCA GTA GGG CTG CAG GCC GCC GAG GAG CCG AGT GAA GAT GCC ATG GCG CAG ATG TTC GCC GGC CTC TAC CAC AAG CCG GCG CAG CGA GCC GGC
Pfulva_12-X_flhF ATG CAG GTC AAA CGC TTT TTC GCT GCC GAT ATG CGC CAA GCC ATG AAG CTG GTT CGC GAT GAG CTG GGC GCC GAT GCG ACC ATC ATT GCC AAC CGC CGT GTG GCC GGT GGT GTG GAA TTG ACG GCT GCG CTC GAT TAT CAG GCT CCG CCG GTT CCG GCG CGC CAG GCC AAT CCG GCG CTG GAA GCC GAG CTG CGC AAG ACC CAG TCG AAG ATC GCT TCG GCC CAC GCC GAG CTG AGC ACG CGT --- --- --- AGC CAG CTT GAT GCC GGC AAG GAT CGT CAG CTG TTT GGC GCG GCA --- --- --- --- --- --- --- --- --- GCT GCC ACG CCG CCG GCC GAC AGC CTG GAA GCT GTG CTC AAG CGT CAG --- --- --- CAG CAG AAG CCT GCT TCG GCC GCG --- --- GTT GAC CAG TCG GCG CTG GAT TCC ATG CGC TCT GAA TTG CAT GGC TTG CGT GAA TTG ATC GAA ATG CAG ATG GGC TCG ATG GCC TGG GGG CAG CTG CAG GCT CGT CGC CCG CAG CAG GCC ACC CTT TGG CGC CGT CTG CAG CGC ATG GGG GTG CCG GCG GAG CTA TCG CGG GTG CTG CTC GAG CGT GTG GCC TCG ATT GCC GAT CAG CGC AAA GCC TGG CGC ATG GTG CTG GCG CAT CTC GCC CAT TCG ATC CAG ACG CCC AAG CAG GAG CCG ATG GAA GAG GGT GGC GTG ATC GCC CTG GTC GGC CCC GCC GGC ATG GGC AAG ACC ACG ACC CTG GCC AAG CTG GCT GCG CGC TAC GTA CTC AAG TAC GGC GCT GCC AGC ATC GCC CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG CTC AAG ACT CTG GGC CGG ATT CTT GGC GTT TCG GTG ACT CAG GTC GAC CCG GGC CAA TCG CTG ACC CAG GCG ATC GCG CCA TTG GCG CGC AAG CGC GTG GTA CTG ATC GAC ACC GCC GGC CTG CCC GCC AAT GAT CCG GCG CTG CGC ATG CAG CTC GAA GCG CTG GCC AGC CGC GGC GTC AAC GCA CGC AAT TAC CTG GTG CTG GCC GCT ACT AGC CAG GCG CAG GTG CTC AAG GCG GCC TAT CAC AGC TAC AAG CGC TGT GGG CTG GCC GGC TGC ATT CTG AGT AAA CTG GAT GAA GCC ACC AGC ATG GGC GAG GTT TTG GGG CTG GCT ATC GGC CAC CGT CTG CCG GTA GCC TAC CTG GCA GAT GGC CCG CGC ATC CCG GAT GAC GTG CAC GTG CCG CGC AGC CAT CAA CTG GTT AGC CGC GCC GTC GGT CTA CAG GCT CCG GAC GAG CCG AGC GAA GAC ACC ATG GCC GAT ATG TTC GCA GGG CTC TAT CAG AAC CCG GCC AGA CAG GCC GGT
After deleting gaps. 1248 sites
10 1248
Pstutzeri_DSM ATG CAG GTC AAA CGT TTC TTC GCT GCC GAC ATG CGG ATC GCC ATG AAA ATG GTG CGT GAC GAG TTG GGC GCG GAT GCC GCC ATA GTC GGC AAT CGC CGG GTT GCC GGC GGC GTC GAG CTG ACC GCT GTG CTC GAT TAT CCG ATG GAA ACG CCT CAC CGT GCC AAC CCG GCG CTG GAG GCC GAG TTG CGC AAG ACT CAG GCG CGC ATC GCC AGT GCC CAT GCC GAA CTG AGC CAG CCG GTC GCC CAG GCG GCA AAT CGC CAG GTG CAG GAT GAG AAA TTG CCG GAG CAG AAG CCT GCA CCT GCC GCG CTG GAC CCG CGT GCC CTG GAA GCC ATG TAC AGC GAG CTG CAC GGT TTG CGC GAG CTG ATC GAA GTG CAG CTG GGC TCG ATT GCC TGG GGC CAG GAG CAG AGC CGT CGC CCG CAG CAG GCC GGC CTC TGG CGC AAA CTG CAG CGT ATC GGG TTG CCG GCC GAG CAG TCG CGC AGC CTG CTG GAA AAG GTC TCG ACC ATC GAC GAC CCG CGC CAG GCC TGG CGG ATG CTG CTG GCG CAC CTG GCG CAG TCC ATC AAG GTC AGC AAG GTC GAA CCG CTG GAG CAG GGC GGC GTC ATC GCG CTG GTG GGT ATG GCC GGT GTC GGC AAG ACC ACC ACG CTG GCG AAG CTG GCG GCG CGC TAT GTC CTC AAG TAC GGC TCG CAG AAT ATT GCG GTG GCC AGC ATG GAC AAT TAC CGC ATC GGT GCT CAG GAA CAA CTG AAG ACC CTC GGC CGC ATC CTC GAT ATC CCG GTG GTC CAG ATC GAC CCG AGC CAG CCG CTG AGC AAG TCG CTG GCG CCG CTT GCG CGC AAG CGC GTG GTG TTG ATC GAT ACC GCC GGT CTG CCG GCC AGC GAT CCG ATG CTG CGC ATG CAG CTC GAG GCG CTG TCC GAC AAG GGA ATC CAG TCG AAG AAT TAT CTG GTG CTG GCG GCG ACT AGC CAG AGC CAG GTG CTC AAG GCT TCG TGG CAC AAC TAC CGG CGT TGC GGC CTG GCG GGC TGC ATT CTG ACT AAA CTG GAT GAA GCC GGG AGC CTG GGT GAT GTT CTG GGG CTA ACG ATT GGC CAG CAT CTG CCG ATA GCC TAT CTC GGT GAC GGT CCG CGT ATT CCG GAT GAC CTG CAT CTG CCG CGC AGT CAC CAG TTG GTC AGC CGA GCG GTG AGC CTG CAG GCC GGG GAG GCC CCG AGC GAG GAA GCC ATG GCC GAT ATG TTC GCC GGG CTG TAC AGC AAT GCT CGG CAG GCC GGG
Pputida_GB-1_flhF ATG CAA GTT AAG CGA TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAG CTG GTC CGT GAC GAG CTG GGC GCC GAT GCC GCG ATC ATA GGC AAC CGC CGC ATT GCC GGT GGT GTC GAA CTG ACG GCC GCG CTG GAC TAC AAG CTG TCC GCC CCG CGC GTG CCC AAC GCC GAG CTG GAA GAA GAG CTG CGC AAG ACC CAT ACG CGC ATC GCC ACT GCC CAG GCC GAG CTG GAC CAC CGT CAG GAC AGC AGC GAC AAC CGC CAA TTG TTC GCC GGG CAG CCG TTG ATC GAG GCC GCT GCG CCG GCT GCC GTC GAC CCG CGC CTG TTC GAT GCC ATG CGC TCC GAG CTG TCG GGC CTG CGC GAG CTG CTG GAA GTG CAG CTC GGC TCG CTG GCC TGG ACC CAG TTG CAG GGC AGC AAG CCG CAG CAG GCC AAC CTT TGG CGC CGC CTG CAG CGC ATC GGC TTG TCC GGG CCT ATC GCC CGC GAG CTG CTG GAC CTC ACC GCC GAG ATC GAA GAG CCG CGC CAG GCT TGG CGC ATG CTG CTG GCG CAC CTG GCA CGG ATG ATC GAG ATT CCT GAA ATC GAG CCG ATC GAA GAG GGC GGG GTC ATC GCC ATG GTC GGC CCG GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTG GCT GCG CGC TAC GTG CTC AAG TAC GGC GCG CAG AAC CTG GCG CTG GTG AGC ATG GAC AGC TTC CGT ATC GGC GCT CAG GAG CAG CTC AAG ACC CTC GGT CGC ATT CTC AAT GTG CCG GTG ACC TAC GTC GAC CCA GGC CAG TCG CTG GCA GCC GCG CTG GAG CCG TTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGC CTG CAG GCC AGC GAC CCG GCG CTG CGC ATG CAG CTG GAA ACC CTG GCC GGG CGT GGC ATC GCC GCT AAG AAT TAC CTG GTG CTG GCT ACC ACT AGC CAG AAG CAG GTG CTG ACC GCT GCC TAC CAC AGC TAC AAG CGT TGT GGC CTG GCC GGC TGC ATC CTG ACC AAA CTC GAT GAA ACG GCA AGC CTT GGC GAC GTG CTG AGC CTT GCC ATC AGT CAT GAA CTG CCC GTG GCC TAC CTT ACC GAT GGC CCG CGC ATT CCT GAC GAC CTG CAC CTG CCG CGG GGC CAC CAA CTG GTC ACC CGC GCG GTA AAT GTG CAG CAG CAG GAC GAG CCC AGC GAA GAG GCC ATG GCC GAC ATG TTC GCT GAT CTC TAT CAC AAC CCA CGG CGA GCG GGT
Pentomophila_L48_flhF ATG CAA GTT AAG CGT TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAG CTG GTC CGG GAT GAG CTC GGC TCC GAC GCC GCC ATC ATC GGC AAC CGG CGC ATC GCT GGC GGT GTC GAG TTG ACG GCC GCG CTG GAC TAC AAG CTG TCC GCC CCA CGC GTA CCC AAC GCC GAG CTC GAG GAC GAG TTG CGC AAG ACG CAG TCG CGC ATC GTC ACC GCC CAG GCG CAG ATC AAT GAT CGC GAG CTG GGC GAG GGT AAC CGC CAG CTG TTC GCC GGT CAG CCG CTG GTC GAG GTC GCC GCG CCC CCG CAG GTA GAC CCG CGC CTG TTC GAC GCC ATG CGC TTC GAG CTG ACC GGC CTG CGT GAG CTG CTT GAA GTA CAA CTT GGC TCG CTG GCC TGG AGC CAG TTG CAG GGC AGC AAG CCG CAG CAG GCC AAC CTC TGG CGT CGC CTG CAG CGC CTG GGC CTC TCC GGT GGC CTG GCG CGC GAA CTG CTC GAG CTC ACG GCT GAA ATC GAA GAG CCG CGT CAA GCC TGG CGC ATG GTG CTG GCG CAC CTG GCG CGC ATG ATC GAA GTA CCC GAG ATC GAG CCG ATC GAG GAG GGC GGA GTG ATC GCC ATG GTC GGC CCG GCC GGC ATG GGC AAG ACC ACC ACG CTG GCC AAG CTG GCC GCC CGT TAC GTA CTC AAG TAC GGC GCG AAC AAC CTG GCG CTG GTC AGC ATG GAC AGC TAC CGC ATT GGC GCC CAG GAG CAG CTC AAG ACC CTT GGG CGC ATC CTC AAC GTG CCG GTC ACC TAC GTC GAC CCG GGC GAG TCG CTG GCC CAG GCC CTC GAG CCC CTG CTG CGC AAG CGC GTG GTG CTG ATC GAC ACC GCC GGC CTG CAG GCC AGC GAC CCG GCC CTG CGC ATG CAG CTG GAG ACG CTG GCC GGG CGC GGC ATC GCC GCC AAG AAC TAC CTG GTG CTG GCA ACC ACC AGC CAG AAG CAG GTG CTT ACC GCC GCC TAC CAC AGC TAC AAG CGC TGC GGC CTG GCC GGT TGC ATC CTG ACC AAA CTC GAT GAA ACG GCT TGC CTC GGC GAA GTG CTG AGC CTG GCC ATC AGT CAT GAA TTG CCG GTG GCC TAC CTG ACC GAC GGG CCA CGT ATT CCT GAC GAC CTG CAA TTG CCG CGC AAG CAC CAG CTG GTG AGC CGC GCG GTA AGC GTA CAG ATG CAG GAC GAG CCC AGC GAA GAG GCC ATG GCC GAC ATG TTC GCT GAT CTC TAC CAC AAC CCT AAG CGT GCG GGT
Psyringae_DC3000_flhF ATG CAA GTT AAG CGA TTT TTC GCC GCC GAT ATG CGT CAA GCC ATG AAA CTG GTT CGC GAT GAG CTG GGC GCC GAG GCG GCC ATC ATC GGT AAC CGG CGC ATT GCC GGT GGC GTA GAG CTG ACT GCC GCT CTG GAT TAC AAG CTG TCT GCG CCG CGT GTG CCG AAT ATG GAA CTC GAA GAC GAG CTG CGC AAG ACT CAG TCG CGC ATC GTC TCC GCT CAG GCC GAA CTG AAC AAC CGT GAC AGC GAT GCG TCG AAC CTT CAG CTG TTT TCC GGC AAG ACG CAT ATC GAA GCT CCC GCA CCG GCT GCA GGC GGT CAG CGT GCC TTT GAC TCG ATG CGC TCT GAA TTG AAC GGC CTG CGC GAG CTG CTG GAA GTC CAG CTC GGC TCC CTT GCC TGG AAC CAG CTA CAA GGC AGC CGT CCG CAG CAG GCC AAC CTG TGG CGC CGT CTG CAA CGC GTC GGC CTG TCC GGC CCG CTG TCT CGC GAT CTG CTG TCG ATG ATC CCG GAC ATC GAC GAG CCT CGT CAG GCC TGG CGC ATG TTG CTG GCC CAT CTG GCC CGC ATG ATT GCT GTA CCG GAC ATC GAG CCG CTG GAA GAG GGC GGA GTG ATT GCC ATG GTC GGT CCT GCC GGT ATG GGC AAG ACC ACC ACT CTG GCC AAA CTG GCG GCA CGT TAT GTG TTG AAG TAC GGC CCG CAG AAT ATC GCC CTG GTC AGT ATG GAC AGT TTC CGC ATC GGC GCG CAG GAA CAG CTC AAG ACT CTT GGG CGC ATC CTC AAC GTG CCG GTC ACC CAT GTC GAT CCG GGC CAG TCG CTG GTT CAG GCG CTG GAG CCT TTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGG CTG CAG GCC AGT GAT CCT GCG CTG CGC ATG CAG CTT GAA AGC CTG GCA GGG CGC GGC ATC AAA TCA CGT AAC TAC CTG GTG CTG GCG ACG ACC AGC CAG AAG CAG GTG CTG ACC GCT GCG TAT CAC AGT TAC AAA CGG TGT GGC CTG GCC GGA TGC ATT CTG ACC AAG CTT GAT GAA ACA GCC AGC CTG GGC GAA GTC CTG AGC CTG GCG ATC AGT CAC GAG TTA CCG GTG GCC TAC CTC ACG GAC GGT CCA CGT ATT CCT GAT GAC CTG CAC ACT CCA CGA CGT CAT CAA CTG GTG AGT CGT GCG GTG AGT GTG CAG ATG CAG GAT GAG CCT AGC GAG GAA GCG ATG GCG GAT ATG TTT GCT GAC CTC TAT CAC ACC CCT AAG AGA GTG GGT
Pfluorescens_A506_flhF ATG CAA GTT AAG CGT TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAG TTG GTC CGC GAT GAG CTG GGC GCC GAT GCC GCG ATT ATC GGT AAC CGT CGG ATT GCC GGC GGT GTC GAG CTG ACG GCT GCC CTG GAT TAC ACG CCC CAG GCC CCG CGC GTG CCG AAC ATG GAA CTC GAA GAC GAG CTG CGC AAG ACC GCC TCG CGC ATT GTA TCG GCC CAG GCT GAA CTG AGC ATG CGC GAC AGC GAT GCC AGC AAT CGC CAA TTA TTC GCC GGC CTG CCG CTG GTT GAG GCG CCT GCC CCG GCC GCC GTT GAC CAG CGT GTG ATC GAC TCG ATG CGC TTT GAA CTC AGT GGC CTG CGC GAA TTG CTC GAA GTG CAG CTG GGC TCG TTG GCC TGG ACT CAG TTG CAA GGC AGC AAG CCG CAG CAA GCC AAC CTG TGG CGT CGC TTG CAG CGC ATC GGC CTG TCC GGC CCG TTG TCC CGC GAC CTG CTG GCC TTG ACC GCC GAA GTC GAA GAA CCT CGT CAG GCC TGG CGC ATG TTG CTG GCG CAT CTG GCG CGC ATG ATC GCC ACG CCG GAA ATC GAA CCC CTG GAA GAG GGC GGT GTG ATC GCC ATG GTC GGC CCC GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTG GCC GCC CGT TAT GTG CTT AAG TAC GGC GCA CAG AAT ATC GCG TTG GTG AGC ATG GAC AGC TAC CGC ATC GGC GCC CAG GAG CAG CTC AAG ACC CTG GGC CGC ATT CTC AAC GTG CCG GTG ACC CAT GTC GAC CCG GGC CAG TCC CTG GCC AAT GCC CTC GAG CCG TTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGC CTG CAA GCC AGT GAT CCA GCG CTG CGC ATG CAG CTC GAA AGC CTG GCC GGG CGT GGC ATC AAG TCG AAA AAT TAC CTG GTG CTT GCA ACC ACC AGC CAG AAA CAG GTT CTT ACC GCT GCC TAT CAC AGC TAC AAG CGT TGC GGC CTG GCC GGC TGC ATC CTC ACC AAA CTC GAC GAA ACC GCG AGC CTG GGC GAG GTA TTG AGC CTG GCC ATC AGC CAT GAA TTA CCG GTT GCC TAC CTC ACC GAC GGG CCG CGG ATC CCG GAT GAT CTG CAT CTG CCG CGC CGT CAT CAG TTG GTC AGC CGT GCC GTG AGT GTG CAA ATG CAA GAC GAG CCT AGC GAG GAA GCG ATG GCC GAT ATG TTC GCC GAC CTT TAC CAC CAC CCG AAA CGG GTG GGT
Pbrassicacearum_NFM421_flhF ATG CAA GTG AAG CGT TTT TTC GCC GCC GAC ATG CGT CAG GCC ATG AAA CTG GTT CGT GAC GAG CTG GGC GCT GAA GCA GCC ATC ATT GGC AAC CGT CGT ATC GCC GGC GGT GTC GAG CTG ACG GCG GCC CTG GAT TAC AAA CTG TCT GCC CCG CGG GTT CCG AAC ATG GAA CTC GAA GAT GAG CTG CGC AAG ACT CAA TCG CGC ATC GCC AGC GCC CAG GCC GAG CTG AGC CTG CGC GAG GCC GCG GCA GGC AAT CGT CAA TTG TTC GCC GGT CAG CCG CTG ATC GAG GAG CCG GCG CCC GCG GCG GTC GAT CCG CGC GCC CTG GAC TCG ATG CGC TTT GAA CTC AAC AGC CTG CGC GAG CTG ATG GAA GTC CAG CTC GGC TCC CTG GCC TGG AAC CAG CTG CAA GGC AGC CGT CCA GCC CAG GCC AAC CTG TGG CGT CGC CTG CAA CGC ATC GGC CTG TCC GGC CCG TTG TCC CGG GAC CTG CTG GCG CTG ATC AAT GGT ATC GAA GAG CCT CGC CAG GCC TGG CGC ATG TTG CTG GCG CAC CTG GCG CGG ATG ATC GCG ACC CCG GAA GTC GAG CCG CTG GAA GAA GGC GGG GTA ATT GCC ATG GTC GGT CCT GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTC GCC GCC CGT TAT GTA CTC AAG TAC GGC GCC CAG AGC ATT GCC CTG GTG AGC ATG GAC AGT TTC CGC ATC GGT GCC CAG GAG CAA CTC AAG ACC CTC GGC CGG ATC CTC AAT GTG TCG GTG ACC CAT GTG GAT CCG GGC CAG TCC CTG GCC CAG GCG CTG GAG CCG CTG CTG CGC AAA CGC GTC GTG CTG ATC GAT ACC GCA GGC CTG CAA GCC AGC GAT CCA GCC CTG CGC ATG CAG CTC GAA AGC CTG GCC GGA CGC GGT ATC AAG TCA AAA AAT TAT CTC GTG TTG GCA ACC ACC AGC CAG AAA CAG GTT CTA ACC GCC GCA TAC CAC AGC TAC AAA CGC TGC GGG CTG GCC GGC TGC ATC CTG ACT AAG CTG GAC GAA ACG GCA AGC CTG GGC GAG GTG TTG AGC CTG GCG ATC GGT CAT GAA TTA CCG GTG GCC TAC CTG ACC GAC GGG CCG CGG ATC CCG GAT GAT TTG CAT CTG CCG CGC CGT CAT CAA CTG GTC AGT CGT GCC GTG AGT GTG CAA ATG CAG GAA GAA CCC AGC GAA GAA GCC ATG GCT GAT ATG TTC GCT GAT ATC TAC CAC AGC CCG AAG CAG GTC GGC
Pprotegens_Pf-5_flhF ATG CAA GTT AAG CGT TTT TTC GCC GCC GAT ATG CGT CAG GCC ATG AAA CTG GTT CGT GAT GAG TTG GGC GCT GAA GCC GCC ATC ATC GGC AAC CGG CGG ATC GCC GGC GGT GTC GAG CTG ACG GCT GCG CTG GAT TAC AAG TTG TCG TCG CCA CGG GTT CCG AAC ATG GAA CTC GAG GAC GAG CTG CGC AAG ACC CAG TCG CGG ATT GTC ACC GCC CAG GCT GAA CTG AGC CTG CGG GAC AGT GCC TCG ATC AAT CGC CAG CTG TTC GCC GGC CTG CCC CTG ATC GAG GCG CCG GCT CCA GCA GCG GCC GAT ACG CGG GCG CTG GAC TCG ATG CGT TTC GAG CTC AAC GGT CTG CGC GAA CTG CTG GAA GTG CAG CTC GGC TCC CTG GCC TGG AGC CAA TTG CAG GGC AGC CGT CCG GAG CAG GCC AAC CTC TGG CGT CGC CTG CAG CGC ATC GGC CTG TCG GGC CCG CTG GCC CGT GAC CTG CTG GCA CTG ATT ACC GAA ATC AAC GAA CCC CGT CAG GCC TGG CGC ATG TTG CTG GCG CAC CTG GCG CGA ATG ATC CAG ACC CCG GAA GTC GAG CCT CTG GAA GAG GGC GGT GTG ATC GCC ATG GTC GGC CCG GCC GGC ATG GGC AAG ACC ACC ACC CTG GCC AAG CTG GCG GCG CGC TAC GTG CTC AAG TAC GGG GCG CAG AAC ATT GCC CTG GTG AGC ATG GAC AGC TAC CGC ATC GGC GCC CAG GAG CAG CTC AAG ACC CTG GGG CGC ATC CTC AAT GTG TCG GTG ACC CAT GTG GAC CCG GGC CAG TCC CTG GCC CAG GCA CTG GAT CCG CTG CTG CGC AAG CGC GTG GTG CTG ATC GAT ACC GCC GGC CTG CAG GCC AGC GAT CCG GCG TTG CGC ATG CAA CTG GAG AGC CTG GCC GGT CGT GGC ATT CGT GCG AAG AAC TAT CTG GTA CTG GCT ACC ACC AGC CAG AAA CAG GTG CTG ACC GCC GCC TAC CAC AGC TAC AAA CGC TGC GGC CTG GCC GGT TGC ATC CTG ACT AAA CTT GAT GAA ACA GCC AGT CTT GGC GAA GTG TTG AGC CTG GCT ATC AGT CAT GAA CTG CCG GTT GCC TAT CTC ACT GAT GGT CCG CGG ATT CCT GAC GAT CTG CAC CTG CCT CGC CGG CAT CAG CTG GTG AGT CGC GCG GTA AGC GTA CAG ATG CAG GAA GAA CCC AGC GAG GAA GCC ATG GCC GAC ATG TTC GCT GAC CTT TAC CAC AGC CCG AAA CGG GTT GGC
Paeruginosa_PAO1_flhF ATG CAA GTC AAA CGC TTC TTC GCC GCC GAT ATG CGC CAG GCC ATG AAA CTG GTC CGC GAC GAA CTG GGT CCG GAC GCC GCG ATT CTC GGC AAC CGC CGG GTC GCC GGC GGC ATC GAG CTG ACC GCG GCG CTG GAT TAC CAG GCC CCG GCG CCG AGC AAG CCC AAC CCG GCG CTG GAA GTG GAG CTG CGC AAG ACC CAG GCG CGG ATC GCC GAG GCG CGC GCC GAG TTG ACG GCG CGT GCG GAA ACC CAG CGC GAC CGT CAA TTG TTC GCC GAG GAG AAG CCG GCG CGT ACG GCG GCG CAT GCC AAG GTG GGC GGC CAG ACC CTC GAG GCA ATG CGT TTC GAA CTG AAC GGC CTG CGC GAG CTG ATC GAG GTA CAA CTG GGT TCC ATC GCC TGG GGC CAG TTG CAG CAC CAG CGT CCG CAG CAG GCC AAT CTC TGG CGG CGC CTG CAG CGC ATG GGC TTG CCG GCG GAG CTG AGC AAG CCG TTG CTG GAG CGG GTC GCC GCG GTG GGC GAT ACG CGC CAG GCC TGG CGC ATG CTG TTG GCG CAC CTG TCG CGT GCC GTG CAG ACC CCC GAG CAG GAC CCG CTC GAC GCG GGC GGC GTA CTG GCC CTG GTC GGC CCG GCA GGC GCC GGC AAG ACC ACC ACC CTG GCG AAG ATG GCC GCG CGC TAC GTC CTC AAG TAC GGC GCC CAG AGC CTG GCG CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG ATC AAG ACC CTC GGT CGG ATC CTC AAC GTA CCG GTG ACC CTG GTC GAT CCC GGC CAG TCG CTG ATC CAG GCC CTG GCG CCG CTG GCG CGC AAG CGC ATG GTG CTG ATC GAT ACC GCC GGC CTG CCG GCC AGC GAC CCG GCA TTG CGC ATG CAG CTC GAG GCA CTG GCG TCG CCG AGC CTG AAC GTG AAG AAT TAC CTG GTG ATG GCC ACC ACC AGC CAG AGC CAG GTG CTC AAG TCG GCC TAC CAG ACC TAT CGG CAC TGC GGG CTG GCG GGT TGC ATC CTG ACT AAG CTG GAC GAG GCG GGC AGC CTC GGT GAA TCG ATG GCG CTG GCT ATC GCC CAG CGT CTC CCG GTA GCC TAT CTG GCG GAT GGG CCG CGG ATT CCG GAC GAC CTG CAG GTG GCG CGC AGT CAC CAA CTG GTC AGC CGG GCG GTG AGC CTG CAG GCA CCG GAA GAG CCC AGC GAG GAC GCC ATG GCC GAG ATG TTC GCC GGG CTC TAC CAG CAA CCG CGG CGT GCC GGC
Pmendocina_NK-01_flhF ATG CAG GTC AAA CGC TTC TTC GCC GCC GAT ATG CGG ACC GCC ATG AAA CTG GTG CGT GAC GAA TTG GGC GCT GAT GCC TCG ATC ATC GGC AAT CGC CGC GTT GCC GGT GGC GTC GAG CTG ACT GCT GCG CTG GAT TAC CAG GCG CCG ACG CCG GTA CGC CCG AAC CCG GCA CTG GAA GCC GAA TTG CGC AAG ACC CAG GCG CGC ATC GCC AGC GCC CAG GCC GAG CTG ACC ACC CGT GAG CAG GAT GCC GGT GAC CGT CAG CTG TTC GCC AAT GAA CTG CCG GCG ACT GCC GTA GCG CCT GCT ACG GTC GAT CCA CGT GCG CTG GAT GCC ATG CGC TTC GAG CTC AAC GGC CTG CGT GAG CTG ATC GAA GTG CAA CTG GGC TCC ATT GCC TGG GGG CAA CTG CAG AAC CGC CGC CCG CAA CAA GCC AAT CTG TGG CGT CGC CTA CAG CGC ATG GGG CTG TCC GCC GAA TTG ACC CAA GCG CTG CTG GGC AAG GTC GCG GGC GTG GCC GAG CCT CGT CAG GCC TGG CGC ATG CTG CTG GCG CAC CTG GCT CAT GCG ATC AAA ACG CCC AAG GTC GAG CCG CTG GAA GAG GGC GGA GTG ATC GCG CTG GTC GGT CCT GCC GGC ATG GGC AAG ACC ACT ACT CTG GCC AAG CTG GCC GCC CGC TAC GTG CTT AAG TAC GGC GCG CAA CAG GTC GCT CTG GTG AGC ATG GAC AGC TTT CGT ATC GGT GCG CAG GAG CAG CTC AAG ACG CTC GGG CGT ATC CTT GGC GTT TCG GTG ACC CAG ATC GAC CCC GGT CAG TCT CTG CTG CAG GCT TTG GCC CCG CTG GCC AAG AAG CGC GTG GTG CTG GTC GAT ACT GCC GGC TTG CCG GGT AAC GAT CCG GCG CTG CGC CTG CAG CTG GAA AGC CTG GCC TCG GCA CGC ATC AAG GCG AAG AAT TAT CTG GTA CTG GCG GCA ACA AGT CAG AGC CAA GTG CTC AAG GCG GCC TAC CAT AGT TAT AAG CGT TGT GGT CTC GCA GGC TGC ATA CTG ACG AAA CTG GAT GAG GCG GCG AGC CTG GGC GAG GTT TTA GGT CTG GCT ATA GGC CAG CAA CTG CCG GTA GCC TAT GTC ACA GAC GGG CCG CGG ATC CCT GAT GAT CTG CAA GTG CCG CGC AGC CAT CAA CTG GTT AGC CGT GCA GTA GGG CTG CAG GCC GCC GAG GAG CCG AGT GAA GAT GCC ATG GCG CAG ATG TTC GCC GGC CTC TAC CAC AAG CCG CAG CGA GCC GGC
Pfulva_12-X_flhF ATG CAG GTC AAA CGC TTT TTC GCT GCC GAT ATG CGC CAA GCC ATG AAG CTG GTT CGC GAT GAG CTG GGC GCC GAT GCG ACC ATC ATT GCC AAC CGC CGT GTG GCC GGT GGT GTG GAA TTG ACG GCT GCG CTC GAT TAT CAG GCT CCG CCG GCG CGC CAG GCC AAT CCG GCG CTG GAA GCC GAG CTG CGC AAG ACC CAG TCG AAG ATC GCT TCG GCC CAC GCC GAG CTG AGC ACG CGT CAG CTT GAT GCC GGC GAT CGT CAG CTG TTT GGC GCG GCA CCG CCG GCC GAC CAG CAG AAG CCT GCT TCG GTT GAC CAG TCG GCG CTG GAT TCC ATG CGC TCT GAA TTG CAT GGC TTG CGT GAA TTG ATC GAA ATG CAG ATG GGC TCG ATG GCC TGG GGG CAG CTG CAG GCT CGT CGC CCG CAG CAG GCC ACC CTT TGG CGC CGT CTG CAG CGC ATG GGG GTG CCG GCG GAG CTA TCG CGG GTG CTG CTC GAG CGT GTG GCC TCG ATT GCC GAT CAG CGC AAA GCC TGG CGC ATG GTG CTG GCG CAT CTC GCC CAT TCG ATC CAG ACG CCC AAG CAG GAG CCG ATG GAA GAG GGT GGC GTG ATC GCC CTG GTC GGC CCC GCC GGC ATG GGC AAG ACC ACG ACC CTG GCC AAG CTG GCT GCG CGC TAC GTA CTC AAG TAC GGC GCT GCC AGC ATC GCC CTG GTG AGC ATG GAC AGC TAC CGG ATC GGC GCC CAG GAG CAG CTC AAG ACT CTG GGC CGG ATT CTT GGC GTT TCG GTG ACT CAG GTC GAC CCG GGC CAA TCG CTG ACC CAG GCG ATC GCG CCA TTG GCG CGC AAG CGC GTG GTA CTG ATC GAC ACC GCC GGC CTG CCC GCC AAT GAT CCG GCG CTG CGC ATG CAG CTC GAA GCG CTG GCC AGC CGC GGC GTC AAC GCA CGC AAT TAC CTG GTG CTG GCC GCT ACT AGC CAG GCG CAG GTG CTC AAG GCG GCC TAT CAC AGC TAC AAG CGC TGT GGG CTG GCC GGC TGC ATT CTG AGT AAA CTG GAT GAA GCC ACC AGC ATG GGC GAG GTT TTG GGG CTG GCT ATC GGC CAC CGT CTG CCG GTA GCC TAC CTG GCA GAT GGC CCG CGC ATC CCG GAT GAC GTG CAC GTG CCG CGC AGC CAT CAA CTG GTT AGC CGC GCC GTC GGT CTA CAG GCT CCG GAC GAG CCG AGC GAA GAC ACC ATG GCC GAT ATG TTC GCA GGG CTC TAT CAG AAC CCG AGA CAG GCC GGT
Printing out site pattern counts
10 1176 P
Pstutzeri_DSM AAA AAA AAA AAA AAA AAC AAC AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAT AAT AAT AAT AAT AAT ACC ACC ACC ACC ACC ACC ACG ACG ACG ACT ACT ACT AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGT AGT ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATG ATG ATG ATG ATG ATG ATT ATT ATT ATT ATT CAA CAC CAC CAC CAC CAC CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CAT CAT CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCT CCT CCT CGA CGC CGC CGC CGC CGC CGC CGC CGC CGC CGC CGC CGC CGC CGC CGG CGG CGG CGG CGG CGT CGT CGT CGT CGT CGT CGT CGT CTA CTC CTC CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GCA GCA GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCT GCT GCT GCT GCT GGA GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGG GGG GGG GGG GGG GGG GGT GGT GGT GGT GGT GGT GGT GGT GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTT GTT TAC TAC TAC TAC TAC TAT TAT TAT TAT TCC TCC TCG TCG TCG TCG TCG TCG TCG TGC TGC TGG TGG TTC TTC TTC TTG TTG TTG TTG TTG TTG TTG
Pputida_GB-1_flhF ... ..G ..G C.G CGC ... .G. ... ... ... ... .CC CGT CTC G.A G.. GCC GCC ..C ..C ..C ..C ... .GC ... ... ... ... ..G GAG ..C G.C G.C ..C ..C ... .AG .AT .C. ... ... ... ... CA. CCT GA. GAG GCA G.. G.. TC. .C. G.C ..C G.G ... ... ... ... ... ... ... ... ..T CAG C.G G.. G.G ... ... CC. C.. C.. GC. ..C ..C ... C.G C.G ..G ... ... ... .G. TCG AGC ATC ..A ..A ..A ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ..T .GA .G. G.. G.. GCC T.C TTC ..C ..G G.A AA. .A. ..A ..C ..C ... ... ... ... ... ... ... ... ... ..T .GT G.C T.C T.. TT. ..G ..G G.. ..C AAG ... ... ... ... ... ... ... ... ... ... ... ..G ..T AA. ..C ..C ... ..T A.C ..A ..C ..C ..C ... ... GTG ..T ... ... ... ..G ..G ..G ..T ..T A.C A.. ..C ..C ..C ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T G.C G.. T.C T.G ... ... ..C ..G ..G ..G ..G ..T TCC ..A ... ... ... ... ... ..G ..T ..T .GG ATC CCT ..A ..A ..A ..A ..A ..C ... ... ... ... .G. TT. A.. ..C ..C ..C ..C ..C ... ... ... .CC .AC ..G A.G CAG C.. CTG .AA .A. .AG ... ... ... ... ... ... ... ... ... ... ... ... ..G ..G ..T ..T ..T .GG .TG A.C A.C A.. AGC CT. .A. .A. ..A ..C ..C ..C ..C ..C ... ... ... ... ..T ..T C.A ..C ..C ... ... ..C AA. AC. A.T ... ... ... ... ... ... ... ..G ..T ..T ..T A.C CA. .AT .CA ..C ..T ACC ..C ..C ..C ..C ..C ..C ..C AC. AC. A.A A.. A.G A.T CAG ... ... ... ..G ..T C.. .C. ..A ..C ..C ... ... ... ... ... ... T.. A.. ..G CG. ... ... ..T .T. ..C ..C ..C ..C ATG G.. G.C G.C G.C G.. G.. G.T ... ... ..T .AC ... ... ... ..T CC. C.. C.. C.. C.. C.. ...
Pentomophila_L48_flhF ... ..G ..G C.G CGC ... .G. ... ... ... ... .CC CGC CTC G.. G.A C.. GTC ..C ..C ..C ..C ..C .GC ... ... ... ... ..G GAA ... G.C G.C ..C ..G ..C .AG ... ... ... ... ... T.. CA. CC. .AT GAA GC. G.. G.. TT. .CC .AG ..C G.G ... ... ... ... ... ... ..T C.G ... CAG C.T G.. G.G ... ... CC. C.. C.. GCC ..C ..C ... C.G C.G ..G ... ... ... .G. AC. GGC .T. ..A ... ... G.T A.C ..A ..A ... ... ... ... ... ... ... ... ... G.. ... ..T .GT .GC G.. G.. GCC T.C TTC ..A ..G G.A AA. .A. ... ..C ... ..A ..C ... ... ... ... ... ... ... ..T .GC G.C T.C T.. .T. ..A ..C G.C ..C AAG ... ... ... ... ... ... ..G ..T ..T ..T ..T ... ... AA. ..C ..C AA. ..T A.C ... ..C ..C ... ..C ..G GTA ..G ... ... ..T ..G ..G ..T ... ..G A.C A.. ..C ..C ..C ..T A.C ..C ..C ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... G.. T.. T.. T.. ..C G.A G.A T.C ..G ... ... ..G C.G ..G ..G ..G ..C TCC ..A ... ... ... ... ..T ..G ... ..T .GG .TC .GC ..A ... ... ... ... ..C ... ... ... ... .GT TT. A.C ..A ..C ..C ..C ..C ..C ..C ... .CC .GT ..G A.G ATG C.. CTG .A. CTG .AG ... ... ... ... ... ... ... ... ... ..G ..T .T. ... ..G C.G ... ..T .GT .T. A.C A.. T.. .A. CT. .A. .A. ... CA. ..C ..C ..C T.C ..C ... ... ... ..A ..C C.. ..C ..C ..C ..C ..C AA. A.. A.T ... ... ... ... ... ... ..T ..A ... ..G ..T A.C CA. .AT .CT ..C ..T ACC ..C ..C ..C ..C ..C ..C ..G AC. ACG A.. A.. A.G ..A .AG ... ..G ..G ..A ..T C.. .C. ..A ..C ..C ..A ..C ... ... ... ... C.. A.C ..G CG. ... ... ... ... ..C ..C ..C ..C ATG G.. G.C G.. G.T G.C G.. G.C ... ... ... .AC ... ... ... ..T CC. C.C C.. C.. C.. ... C.C
Psyringae_DC3000_flhF ..G ... ..G ..G CGT ..T .GT ..A ... ... CGT .CC CGC .T. G.C GCT C.. GCT ..C ..C ... .CC ..C .G. ... ... ... ..T ..T GA. ..T G.. G.. ..C ... ..C .AG ..T ..T ... ..T ..T ... CA. CCG .A. GAT GTT G.. G.. TCT TCC C.. ..C G.G ... ... ... ... ..T ..T ... G.. ... CAA C.G G.. G.G ... ... CCT C.. C.. GC. ..C ... ... ..C C.. ..G ... ..T ..T .GT A.. G.T .T. ..A ..A ... A.C ... ... ... ..A ..A ... ... ... ... ... ... ... ... ... ..C AGA .GC G.A G.. A.A ..T TTT ..C ..G G.G AA. .A. ... ..T ... ..A ..T .A. ..A ... ... ... ..T ..T ..T .GT AT. T.C T.. .AT ..G ..G ..C ..T ..T ... ... ... ... ... .TT ..G ... ... ..T ..T ..A ... AAA ..C ..C AA. ..T A.C ..A ..C ... ... ..G ..C GTG ..G ... T.G ..T ..G ..T ..G ..G ... ... A.. ..C ..C ..T ..C ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... T.. T.. ACT ... T.A ... GGC G.. T.T T.G ... ... TCG ... ... ... ..G ..C TCT ... ... ... ..T .GT ..T ..G ... ..T .GG ATC CC. ... ..A ..A ..A ... ..T ..A ... ... ... .GC CTA A.C ..A ... ... ... ... ..G ... ... TCC T.G ... A.A ATG C.G ... .A. AG. .AG ... ... ... ... ..G ..G ..G ..T T.G ... ... .T. ... .TG ..T ... ..T .G. .T. A.. AGC T.. ... CT. .AA .A. ..C ..A ..C ..C ..C ..C ..A ..C ..C ... ... ... C.. ..C ..C ..G ... ..C AA. AA. A.T ... ... ... ... ... ..T ..A ..A ..T ..G ... A.C CA. .AC .CC ..C ..T ACG ..C ..C ..C ..G ... ... ... AC. A.. A.. A.. A.G ..A .A. ..A ..G ..G ..G ..T C.. .CT ... ..C ..T ..C ..C ... ... ... ... C.. A.. ..C CG. ... ... ..T .T. ..C ..C ..C ... ATG G.A G.. ..T C.. G.. C.. ..A ..C ... ..T .AT ... ... ..T ..T AC. C.. C.. C.. C.. C.. C..
Pfluorescens_A506_flhF ... ..G ..G CTG CGC ... .G. ... ... ... ..A .CC CGT TT. G.A GCC ..T GC. ..C ... ... C.C ... .GC ... ... ... ... ..G GAA ..C G.C G.C ..C ..C ..C .AA ..T ... ... ... ..T ... CA. CCG ... GA. GC. G.. G.. TTT TCG C.. ..T G.T ... ... ..T G.. ... ... ... ... ..T CAG C.. G.. G.G ... ... CCC CCC T.. GC. ..C ..C ..C ..C T.G ..G ... ..T ..T .G. AGT G.T TT. ..A ... ..A AT. ... ... ... ..A ... ..A ..A ... ... ... ... ... ... GCC ..T .G. .GC G.. G.. A.. ..T TTC ... ..G G.A A.. .AA ... ..T ... ... ... .A. ... ..C ... ... ..A ..T ... .GC AT. T.C T.C .T. ..G ..G ... ..T AAG ... ... ... ... ... ... ..T ... ..T ..T ..T ... ... AA. ..C ... AAA ..T A.C ... ..C ... ..G ... ..C GTG ..G ... ..T ..G ..G ... ..T ..G ... ... A.. ..C ..T ..C ... ... ..C ..C ... ..C ... ... ... ... ... ... ... ... ... ..T T.. T.. T.. ..C T.. ... ... T.A ... G.T G.. A.C T.G ... ... .CC ... ... ..G ... ..C C.G ..A ... ..T ... ... ..T ..A ... ..T .GG .TT CC. ... ..A ..A ..A ... ..C ..A ..A ... ... .GC TT. A.C ..G ... ... ... ... ... ... ..C .CC AGC ..C A.. ATG C.G .TG .A. AG. .AG ... ... ... ... ... ... ..G ... T.G ..T ... .TA ..G .TG ... ... ... .G. .TG A.C AGC T.. ..C CT. .AA .A. ... ..C ..C ..C ..C ..C ..C ... ... ..C ..A ..C C.G ..C ... ..C ... ..C AA. ACT A.. ... ... ... ... ... ..T ... ..T ... ... ..T A.C CAA .AC .C. ..C ..T ACC ..C ..C ..C ..C ..C ..C ..G AC. AC. A.. A.. A.G ACG .A. ... ... ..G ..G ..T T.. .CC ... ..C ..C ... ... ... ... ... ..T T.A A.. ..A CG. ... ... ... ... ..C ..C ..C ... ATG G.. G.C ..C G.C G.C G.A ... ... ... ... .AT ... ... ... ..T CC. C.. C.. C.. ... C.. C..
Pbrassicacearum_NFM421_flhF ..G ... ..G C.G CGC ... .G. ... ..A ... ..A .CC CGC CT. G.A GC. C.. G.. ..C ... .GC .GC ... .G. ... ... ... ... ..G GGT ..C G.C G.. ... ... ..C .AA ..T ..T ... ... ... ... CA. CCG ... GA. GC. G.. G.. TTT ..C C.. ..C G.G ... ... ... ... ... ..T ... ... ... CAG ..G G.G G.G ... ... CCT C.. C.. GCC ..C ..C ..C ... C.G ... ... ... ..T .GG A.. GC. TT. ..A ..A ..A .T. ... ... ... ..A ..A ..A ... ... ... ... ... GCC ... ..A ..T ... .G. G.. G.A A.. ..T TTC ... ..G G.A AAA .AA ... ..C ... ... ... ... ... ... ..A T.. ..A ..T ... .GC AT. T.C T.C .T. ..G ..C ..G ..T ..T ... ... ... ..G ..G ..T ..T ... ..T ... ..T ... ... AAA ..C ..T AA. ..T A.C ... ..C ..C ..G ..C ... GT. ..G ... ... ... ..G ... ..A ..G ..G ... A.. ..C A.C ... ..C ... ..C ... ... ... ..C ..C ... ... ... ... ... ... T.. T.. ... ... T.. ..C T.. ... ... T.A ... G.C G.. ... ..G ... ... .CG ..G ... ..G ..G ..C TCT ..A ... ..T ..T ..T ... ..G ... ... .GA ATC CC. ..A ..A ..A ..A ... ..A ..A ... ... ... .GT CT. A.. ..G ... ... ... ... ..A ... ..C .CC .GC ..G A.G ATG C.G ... .AT ... .AA ..A ... ... ... ..A ..T ... ... T.G ... ... ... ... .T. ..G ... ..T .G. .TG A.C AGC T.. ..A CT. .AA .A. ... ... ..C ..C ..C ..T ..C ..C ... ..C ..A ..C C.G ..C ..G ..C ..C ..T AA. AA. ..T ... ... ... ... ..G ... ... ..G ... ... ..T A.C CA. .AT .CA ..C ..C ACC A.C ..C ... ..C ..C ... ..G AC. A.. A.T ... A.G AC. .AG ... ... ..A ..A ..G C.. .CC ... ..C ..T ..C ... ..C ... ... ..T T.. A.C ..G CG. ... ... ... .T. ..C ..C ... ... ATG G.. G.A ..C AAT G.. G.C ..A ..C ... ... .AC ... ... ... ..T CC. C.. C.. C.. C.. C.. C..
Pprotegens_Pf-5_flhF ... ... ..G CTG CGC ... .G. ... ... ... ... .CC CGT CT. G.A C.. C.. GC. ..C ... ..C .GC ..C .GC ... ... ... ... ..G GAA ..C T.. G.T ... ..C ..C .AA ... ..T ... ... ... ..T CA. CCG ... GA. GC. G.. G.. TT. .CC C.G ..C G.T ... ..T ..T ... ... ... ... ... ... CAG C.G G.G G.G ... ... CC. T.. C.. GC. ..C ..C ... ... C.G ..G ... ... ..T .GG A.. GCC .T. ..A ... ... .T. ... ... ... ... ... ... ... ..A ..A ... ... G.. ... ... ..T .G. .GA G.. G.. .GT ..T TTC ..C ..G G.A AA. .A. ... ..C ... ... ... A.. ..T ..T ... T.. ... ..C ..T .G. AT. T.. T.C .T. ..A ..A ..G ..C ..T ... ... ..G ... ..T ... ..G ... ..T ..T ... ... ... AAA ..C ... AAA ..T A.C ... ..C ..G ..G ..C ... GT. ..G ... ... ..G ..G ..G ..G ... ... ... A.. ..C ..T ..T ..C ... ..C ... ... ... ... ... ... ... ... ... ... T.. ... ... ... ... T.. ..C T.. ... ... ... ..T GCC G.A ... ..G ... ... .C. ... ... ..G ..G ..C TCG A.. ... ..T ... ..T ..T ..A ..T ..T .GT ATC CC. ... ..A ... ... ... ..A ... ..A ... ... .GC TT. A.. ..A ..C ..C ... ... ..A ... ... .CC ATC ..T A.A ATG C.G ..G .A. AGT .AA ... ... ... ... ... ... ... ... T.G ..T ... .T. ... .TT ..A ... ..T .G. .TG A.C AGC T.. T.. CT. .AA .AT ... ... ..C ..C ..C ..T ... ..C ... ... ..T ... C.G ..C ... ..C ..C ..C AA. A.. A.T ... ... ... ..G ... ... ..T ..T ... ..G ..T A.C CA. .AC .CC ..C ..C AC. ... ..C ..C ..C ..C ..C ... AC. A.T A.. ... A.G AC. .A. ... ..G ..G ..G ..T C.. .C. ..A ..C ..T ... ... ... ..A ... ... C.. A.C ..G CGT ... ... ... ... ..C ... ... ..C ATG G.. G.C G.C A.C G.A G.. G.. ..C ... ... .AC ... ... ... ..T CCC ... C.. C.. C.. C.. C..
Paeruginosa_PAO1_flhF ..G ... ... G.G CGC ... .C. ... ... ... ... ... CC. CG. G.. C.. C.. .C. ..C G.C .GC C.A ... .GC ... ... ... ... ... G.G ..C G.. G.T ... ..C ..C ... ... ... ... ... ... ... CAG CC. .CG CCG .T. CA. G.. TT. GAG ... ..T G.. ... C.G ... G.G G.G C.G ... ..G ... CAG ... G.. G.A ... ... CC. GCC C.. GCA ..C ..C ... C.G ..C ..G ..G ... ... AG. A.. ACC .T. ..A ..A ..A GC. ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... .GT .GT .GT GC. A.C .T. TTC ..G .GC .G. .A. ... ..C ..C ... ... ... GGC G.. ... ... ... ... A.. ... .GT ... ... T.. ... ..G .A. G.G ..G ..T ... ... ..G ..G AAG ..T ... ... ..G ... ... ... ..G ... ..C ... ... ..C .AG ..C ..C .AG ..G .AC ..C AAG ..G ... ... ... ..G ... ... ... ..G ..C ... A.C ..C ... ... T.. ... ... ... ... A.. ... ... ... ... ... T.. T.. ... A.. ... ... A.. ... ... G.. ... ..C ..C G.. ... ..C ..G ..G ..G ..G ..G ..C ..G ..C ..G CCG .G. ... ... ..T .G. ... ..T ..T ..T TCG .C. ... ... ..C ..A ... ... ..A ..A ... ..A ... ... TT. A.C ..A ..C ..G ..C ... ..C ... ..C .CC CGC ..G ..G ..A C.. A.. .TG .AA .AG ... ..A ... ... ... ... ... ..G ..A ... ... ... ..G ... ... ... ... ..G .TG A.C ..A ... CA. ... ... ... T.. AA. ..C ... ... C.. ... ... ... ... ..C ..C C.G ..C ..G ..C T.G A.C AAT ... .C. ... ... ..T ... ..G ... ..T ... ... ..T ... .C. CC. ... ..C ..C ..C .CG ..C ... ..C ..C ..C ..C ..G AC. ... C.. CAG .C. AC. .CG A.. ... ..A ... ... C.. .C. ... ..C ..C ..A ... A.. ... ... ... T.. ..C TCG CGT ... ..T ... ... ..C ... ..C ..C G.. G.G G.C AGC G.C G.C G.C GT. ..C ... ... .AC ... ... ... ... AA. C.. C.. C.. C.. C.. ...
Pmendocina_NK-01_flhF ... ... ... G.. CGC ... .GT ... ... ... ... ... GCA ... ... ..A C.. GCC ... G.C C.G ..G ... .GC ... ..T ..T ..G ..T GG. ..T ... G.T ..G ..C ..A ... G.G ... ..T ... .A. ... CA. CC. .C. GCG CTG .A. G.T TT. ..C ..C ..C G.. G.. ... ... G.G ... ... ... ..G ... .C. ... ... G.T ... C.. CCT GC. C.. GC. ..A ..A ..C G.C ... ..G ..T ... ..T GTA A.. G.T TT. ... ..A ... ACC ..A ..A ... ... ... ... ..A ..A ... ..A ... ..A ... ... ... .GA ..T ACT G.. A.. ... TTC ..A ..G ..A .A. ... ..C ... ... ... ... ..A ... ... ... T.. ... ..T ..T .GT ... T.C T.T ... ..G ... GTA ..T ... AAG ... ... ..T .AA ..T ... ..T ..T ..T ... ... ..T AA. ..C ..C .A. ... ..C ..C ..C ... ..G ... ... ..C ..G ..T ..T ... ..G ..G ... ..G G.. ... ... ..C ..C ... ... ... ... T.. ... ... ... ... ..C ... ... T.. ... ... ... ... ..A ... T.A ..C ... G.. ... ... ... G.C ... ... ..G ... ..G .GC ..G ..T ..G ..G ..T CCG .C. ... ..T ... ..T ... ..G ... ..T TCG .C. ..A ..A ..A ..A ..A ... ... ... ... ..A ..A A.T CT. .GC ..G ... C.G ... ... ... ... ... .CC .GT ..G ..G ... C.G ..G ... CAG .AG ... ... ... .GT ... ..G ... ... ... ... ... ... T.G ... ..T ... ... ... .TG ..A AGC ... ..C ..C ..A ..C ..T A.. ... ..A ..C ..T ..C ..T ... ..A ... ..C C.G ..C ... ..G ..G C.C AAT ..G ... ... ... ... ... ..T ... ... ..A ..T ..G ... ..T .CC ..C .C. ... ..C ACA ..C ..C ... ..C ..C ... ..G AC. ... A.. ... A.G ACG .AG ... ..T ..G ..G ... C.. .C. ..A ..C ... ... ... ... ..A ... ... C.. ... ... CG. ... ..T ... .TT ..C ... ... ..C G.G G.. G.C A.C G.. G.T G.. G.. ..C ... ..T .AC ... ... ... ... C.. ... C.. C.. C.. ... C..
Pfulva_12-X_flhF ... ..G ... GC. CGT ..T .G. ... ... ... CGC ... CGC CGT ... C.. C.. C.. ..C G.. .GC ..C ... .GC ... ... ..G ..T ..G T.G ..C C.. G.T .G. ..C ... GCG G.T ... ... ... .AT ... CAG CC. ... GTG .C. GCT G.. TCT TCG ..C ..C G.. ... G.. ... ..T ... ... ... ..G ..T CAA ... G.. G.T ... ... CCC GCT C.. GC. ..C ... ..C ..C ..G ..G ... ..T ..T .G. ..T G.T .TA ... ..A ... AC. GCC ... A.A ... ... ... ... ... ... ... ... ... ..A ... ..C ... ..T G.C G.. A.C ... TTT ..C ..C .G. .A. ..C ... ... ... ... ..A .A. ... ... ... T.. ... .A. ... .GT ... ... T.. ... G.G ... .AG ..C ... ... ... AAG ..G ..G ..T ... ..T ... ... ... ... ..G AA. ..C ..T A.A ..C ... ..C ..C TCG ..C ..C ..C .AG ..G ..T ... ..G ... ... ... ..T ..G A.. ... ..C ..C ... A.. ... ... A.C ..C ... ... ... ... ..C ... ... ... ... G.. ... ... T.. T.. T.. G.. G.. T.. ... A.. G.T ..A ... T.G ... ... ..G ..G ..C ..G ..G ..T CCG .C. ... ... ... ... ..T ..T ..T ..T AG. .CC ... ..A ..A ..A ..A ..A ..C ..A ..A ... ... .C. CT. .GC ..G ... ... ... ... ... ..C ... .GC .GC AAG ... ..T ... ..G ... CTT .AG ... ... ... ... ..G ... A.. ... T.. ... ... ..T A.. ... ..T ... ..A ..G .TG ..T ... T.. ..C ... ... ... ..C T.. ..C ..C ..C ..C ... ..C ... ..C ..C ..T C.G ... ... ..C ..G ..C AC. ..G ... ... ..T ... ... ..G .C. ... ... ..T ... ..T ... CC. ... ACC ... ..T .CA ..C ..C ..C ..C ..C ..C ..C ACT ..G A.T CAG A.G ACG CAG ..G ..T ..G ..A ... C.. .C. ..C ..C ..T A.. ... ... ... ..A ... C.. ..G ... CG. ... ... ..T ... ... ..C ..C ..C ..G G.. G.C ... G.C G.. G.T G.A ... ... ..T .AT ... ... ... ..T CC. C.. C.. ... C.. C.. G..
1 1 1 1 1 1 1 1 1 4 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 2 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 8 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 2 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 3 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 3 1 2 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 5 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 2 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 3 1 1 1 1 1 1 1 1
1 1
CODONML (in paml version 4.4c, August 2010) flhf.paml
Model: One dN/dS ratio for branchesdGamma (ncatG=11)
Codon frequency model: Fcodon
Warning: Gamma model for codons. See documentation.Site-class models:
ns = 10 ls = 416
Codon usage in sequences
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Phe TTT 0 1 1 4 2 2 | Ser TCT 0 0 0 3 0 1 | Tyr TAT 4 1 0 3 2 2 | Cys TGT 0 1 0 1 0 0
TTC 3 5 5 2 3 4 | TCC 2 3 3 4 3 4 | TAC 5 8 10 5 7 6 | TGC 2 1 3 1 2 2
Leu TTA 0 0 0 1 2 1 | TCA 0 0 0 1 0 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 7 5 5 4 12 6 | TCG 7 3 3 5 5 3 | TAG 0 0 0 0 0 0 | Trp TGG 4 3 3 3 3 3
--------------------------------------------------------------------------------------------------------------
Leu CTT 1 4 4 5 4 0 | Pro CCT 3 3 2 7 3 2 | His CAT 3 2 1 4 5 4 | Arg CGT 8 6 8 12 11 11
CTC 8 8 13 6 10 10 | CCC 0 3 5 1 3 2 | CAC 5 6 4 4 3 3 | CGC 16 22 22 17 19 17
CTA 1 0 0 1 0 1 | CCA 0 2 2 2 1 2 | Gln CAA 1 3 4 5 7 9 | CGA 1 2 0 2 0 0
CTG 36 42 38 40 31 41 | CCG 20 13 12 12 15 15 | CAG 29 22 22 20 17 16 | CGG 5 3 2 2 3 5
--------------------------------------------------------------------------------------------------------------
Ile ATT 5 4 2 5 4 3 | Thr ACT 3 2 0 5 1 2 | Asn AAT 6 3 1 2 4 4 | Ser AGT 2 1 1 7 3 3
ATC 13 15 15 13 13 16 | ACC 6 15 12 8 14 11 | AAC 2 6 9 9 4 5 | AGC 16 11 11 7 14 14
ATA 2 1 0 0 0 0 | ACA 0 0 0 1 0 0 | Lys AAA 5 1 1 4 4 6 | Arg AGA 0 0 0 1 0 0
Met ATG 13 12 13 15 15 15 | ACG 3 3 6 3 3 2 | AAG 14 13 15 11 11 9 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------
Val GTT 2 1 1 3 5 3 | Ala GCT 5 9 4 7 3 3 | Asp GAT 10 7 5 12 10 10 | Gly GGT 8 4 6 7 4 7
GTC 12 7 9 8 6 8 | GCC 30 34 36 23 39 34 | GAC 10 15 14 10 11 7 | GGC 15 20 20 17 21 18
GTA 0 1 7 2 2 2 | GCA 2 3 1 4 2 6 | Glu GAA 9 11 9 12 16 16 | GGA 1 0 1 2 0 1
GTG 12 13 10 13 14 11 | GCG 19 11 10 13 8 11 | GAG 14 17 22 12 10 13 | GGG 6 4 3 3 2 3
--------------------------------------------------------------------------------------------------------------
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Phe TTT 1 0 1 2 | Ser TCT 0 0 1 1 | Tyr TAT 2 2 3 3 | Cys TGT 0 0 1 1
TTC 4 5 5 2 | TCC 2 1 2 1 | TAC 7 7 5 6 | TGC 2 2 1 1
Leu TTA 0 0 1 0 | TCA 0 0 0 0 | *** TAA 0 0 0 0 | *** TGA 0 0 0 0
TTG 6 7 5 6 | TCG 7 5 3 10 | TAG 0 0 0 0 | Trp TGG 3 3 3 3
--------------------------------------------------------------------------------------
Leu CTT 3 0 2 3 | Pro CCT 3 0 4 1 | His CAT 3 1 3 4 | Arg CGT 10 8 11 8
CTC 8 12 6 8 | CCC 3 4 2 3 | CAC 4 4 2 4 | CGC 15 17 17 22
CTA 0 0 1 2 | CCA 2 0 1 1 | Gln CAA 3 5 10 3 | CGA 1 0 1 0
CTG 45 37 42 30 | CCG 12 20 15 17 | CAG 21 27 21 28 | CGG 9 10 2 3
--------------------------------------------------------------------------------------
Ile ATT 5 2 1 4 | Thr ACT 2 1 5 3 | Asn AAT 2 2 4 3 | Ser AGT 4 1 3 1
ATC 14 11 11 11 | ACC 13 14 7 9 | AAC 7 5 4 3 | AGC 13 13 8 11
ATA 0 0 2 0 | ACA 1 0 2 0 | Lys AAA 5 2 4 3 | Arg AGA 0 0 0 1
Met ATG 14 14 10 16 | ACG 2 3 5 4 | AAG 9 13 14 12 | AGG 0 0 0 0
--------------------------------------------------------------------------------------
Val GTT 5 0 4 5 | Ala GCT 7 1 7 11 | Asp GAT 10 6 12 13 | Gly GGT 6 5 8 5
GTC 4 8 9 5 | GCC 30 31 33 34 | GAC 9 11 5 8 | GGC 19 20 18 20
GTA 3 4 5 3 | GCA 3 5 5 4 | Glu GAA 15 6 9 9 | GGA 0 0 1 0
GTG 12 12 11 14 | GCG 12 28 20 16 | GAG 12 18 13 10 | GGG 2 3 5 5
--------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: Pstutzeri_DSM
position 1: T:0.08173 C:0.32933 A:0.21635 G:0.37260
position 2: T:0.27644 C:0.24038 A:0.28125 G:0.20192
position 3: T:0.14423 C:0.34856 A:0.05288 G:0.45433
Average T:0.16747 C:0.30609 A:0.18349 G:0.34295
#2: Pputida_GB-1_flhF
position 1: T:0.07452 C:0.33894 A:0.20913 G:0.37740
position 2: T:0.28606 C:0.25000 A:0.27644 G:0.18750
position 3: T:0.11779 C:0.43029 A:0.05769 G:0.39423
Average T:0.15946 C:0.33974 A:0.18109 G:0.31971
#3: Pentomophila_L48_flhF
position 1: T:0.07933 C:0.33413 A:0.20673 G:0.37981
position 2: T:0.29567 C:0.23077 A:0.28125 G:0.19231
position 3: T:0.08654 C:0.45913 A:0.06010 G:0.39423
Average T:0.15385 C:0.34135 A:0.18269 G:0.32212
#4: Psyringae_DC3000_flhF
position 1: T:0.08894 C:0.33654 A:0.21875 G:0.35577
position 2: T:0.29327 C:0.23798 A:0.27163 G:0.19712
position 3: T:0.20913 C:0.32452 A:0.09135 G:0.37500
Average T:0.19712 C:0.29968 A:0.19391 G:0.30929
#5: Pfluorescens_A506_flhF
position 1: T:0.09856 C:0.31731 A:0.21635 G:0.36779
position 2: T:0.29567 C:0.24038 A:0.26683 G:0.19712
position 3: T:0.14663 C:0.41346 A:0.08173 G:0.35817
Average T:0.18029 C:0.32372 A:0.18830 G:0.30769
#6: Pbrassicacearum_NFM421_flhF
position 1: T:0.08413 C:0.33173 A:0.21635 G:0.36779
position 2: T:0.29567 C:0.23798 A:0.26442 G:0.20192
position 3: T:0.13702 C:0.38702 A:0.10817 G:0.36779
Average T:0.17228 C:0.31891 A:0.19631 G:0.31250
#7: Pprotegens_Pf-5_flhF
position 1: T:0.08173 C:0.34135 A:0.21875 G:0.35817
position 2: T:0.29808 C:0.23798 A:0.26202 G:0.20192
position 3: T:0.15144 C:0.37019 A:0.07933 G:0.39904
Average T:0.17708 C:0.31651 A:0.18670 G:0.31971
#8: Paeruginosa_PAO1_flhF
position 1: T:0.07692 C:0.34856 A:0.19471 G:0.37981
position 2: T:0.26923 C:0.27163 A:0.26202 G:0.19712
position 3: T:0.06971 C:0.39663 A:0.05288 G:0.48077
Average T:0.13862 C:0.33894 A:0.16987 G:0.35256
#9: Pmendocina_NK-01_flhF
position 1: T:0.07452 C:0.33654 A:0.19231 G:0.39663
position 2: T:0.27885 C:0.26923 A:0.26202 G:0.18990
position 3: T:0.16827 C:0.32452 A:0.10096 G:0.40625
Average T:0.17388 C:0.31010 A:0.18510 G:0.33093
#10: Pfulva_12-X_flhF
position 1: T:0.08654 C:0.32933 A:0.19471 G:0.38942
position 2: T:0.26683 C:0.27644 A:0.26202 G:0.19471
position 3: T:0.16346 C:0.35577 A:0.06250 G:0.41827
Average T:0.17228 C:0.32051 A:0.17308 G:0.33413
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 14 | Ser S TCT 6 | Tyr Y TAT 22 | Cys C TGT 4
TTC 38 | TCC 25 | TAC 66 | TGC 17
Leu L TTA 5 | TCA 2 | *** * TAA 0 | *** * TGA 0
TTG 63 | TCG 51 | TAG 0 | Trp W TGG 31
------------------------------------------------------------------------------
Leu L CTT 26 | Pro P CCT 28 | His H CAT 30 | Arg R CGT 93
CTC 89 | CCC 26 | CAC 39 | CGC 184
CTA 6 | CCA 13 | Gln Q CAA 50 | CGA 7
CTG 382 | CCG 151 | CAG 223 | CGG 44
------------------------------------------------------------------------------
Ile I ATT 35 | Thr T ACT 24 | Asn N AAT 31 | Ser S AGT 26
ATC 132 | ACC 109 | AAC 54 | AGC 118
ATA 5 | ACA 4 | Lys K AAA 35 | Arg R AGA 2
Met M ATG 137 | ACG 34 | AAG 121 | AGG 0
------------------------------------------------------------------------------
Val V GTT 29 | Ala A GCT 57 | Asp D GAT 95 | Gly G GGT 60
GTC 76 | GCC 324 | GAC 100 | GGC 188
GTA 29 | GCA 35 | Glu E GAA 112 | GGA 6
GTG 122 | GCG 148 | GAG 141 | GGG 36
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.08269 C:0.33438 A:0.20841 G:0.37452
position 2: T:0.28558 C:0.24928 A:0.26899 G:0.19615
position 3: T:0.13942 C:0.38101 A:0.07476 G:0.40481
Average T:0.16923 C:0.32155 A:0.18405 G:0.32516
Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG):
0.00336538 0.00913462 0.00120192 0.01514423
0.00144231 0.00600962 0.00048077 0.01225962
0.00528846 0.01586538 0.00000000 0.00000000
0.00096154 0.00408654 0.00000000 0.00745192
0.00625000 0.02139423 0.00144231 0.09182692
0.00673077 0.00625000 0.00312500 0.03629808
0.00721154 0.00937500 0.01201923 0.05360577
0.02235577 0.04423077 0.00168269 0.01057692
0.00841346 0.03173077 0.00120192 0.03293269
0.00576923 0.02620192 0.00096154 0.00817308
0.00745192 0.01298077 0.00841346 0.02908654
0.00625000 0.02836538 0.00048077 0.00000000
0.00697115 0.01826923 0.00697115 0.02932692
0.01370192 0.07788462 0.00841346 0.03557692
0.02283654 0.02403846 0.02692308 0.03389423
0.01442308 0.04519231 0.00144231 0.00865385
Nei & Gojobori 1986. dN/dS (dN, dS)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)
Pstutzeri_DSM
Pputida_GB-1_flhF 0.3062 (0.2533 0.8271)
Pentomophila_L48_flhF 0.2734 (0.2599 0.9508) 0.1178 (0.0598 0.5074)
Psyringae_DC3000_flhF 0.2266 (0.2449 1.0808) 0.1059 (0.0969 0.9148) 0.1046 (0.0973 0.9305)
Pfluorescens_A506_flhF 0.2466 (0.2420 0.9814) 0.1030 (0.0788 0.7647) 0.0915 (0.0810 0.8853) 0.0686 (0.0634 0.9235)
Pbrassicacearum_NFM421_flhF 0.2146 (0.2221 1.0350) 0.1040 (0.0870 0.8365) 0.1002 (0.0906 0.9040) 0.0742 (0.0650 0.8756) 0.0888 (0.0589 0.6633)
Pprotegens_Pf-5_flhF 0.2700 (0.2306 0.8541) 0.1151 (0.0828 0.7192) 0.1261 (0.0827 0.6562) 0.0655 (0.0626 0.9564) 0.0719 (0.0521 0.7242) 0.0551 (0.0384 0.6979)
Paeruginosa_PAO1_flhF 0.3222 (0.2321 0.7204) 0.3527 (0.2325 0.6590) 0.3010 (0.2252 0.7480) 0.1897 (0.2480 1.3069) 0.2431 (0.2334 0.9599) 0.2712 (0.2256 0.8319) 0.3005 (0.2252 0.7494)
Pmendocina_NK-01_flhF 0.2098 (0.1866 0.8894) 0.2260 (0.1956 0.8652) 0.1734 (0.1882 1.0856) 0.1611 (0.1880 1.1673) 0.1657 (0.1791 1.0807) 0.1496 (0.1653 1.1049) 0.1748 (0.1720 0.9837) 0.1571 (0.1504 0.9576)
Pfulva_12-X_flhF 0.2286 (0.2112 0.9238) 0.2913 (0.2090 0.7177) 0.2050 (0.1971 0.9612) 0.1872 (0.2034 1.0867) 0.2150 (0.1911 0.8889) 0.1750 (0.1862 1.0638) 0.1873 (0.1894 1.0110) 0.2206 (0.1796 0.8140) 0.1604 (0.1496 0.9327)
Model 0: one-ratio
TREE # 1: (((1, ((8, 10), 9)), (2, 3)), (4, 5), (6, 7)); MP score: 1337
lnL(ntime: 17 np: 20): -7348.399258 +0.000000
11..12 12..13 13..1 13..14 14..15 15..8 15..10 14..9 12..16 16..2 16..3 11..17 17..4 17..5 11..18 18..6 18..7
0.156492 1.099771 1.753978 0.190737 0.175876 1.261530 1.087310 0.837874 0.336528 0.388500 0.394502 0.052596 0.698906 0.405279 0.124036 0.361797 0.387281 1.990784 0.053973 0.500000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 9.71299
(((1: 1.753978, ((8: 1.261530, 10: 1.087310): 0.175876, 9: 0.837874): 0.190737): 1.099771, (2: 0.388500, 3: 0.394502): 0.336528): 0.156492, (4: 0.698906, 5: 0.405279): 0.052596, (6: 0.361797, 7: 0.387281): 0.124036);
(((Pstutzeri_DSM: 1.753978, ((Paeruginosa_PAO1_flhF: 1.261530, Pfulva_12-X_flhF: 1.087310): 0.175876, Pmendocina_NK-01_flhF: 0.837874): 0.190737): 1.099771, (Pputida_GB-1_flhF: 0.388500, Pentomophila_L48_flhF: 0.394502): 0.336528): 0.156492, (Psyringae_DC3000_flhF: 0.698906, Pfluorescens_A506_flhF: 0.405279): 0.052596, (Pbrassicacearum_NFM421_flhF: 0.361797, Pprotegens_Pf-5_flhF: 0.387281): 0.124036);
Detailed output identifying parameters
kappa (ts/tv) = 1.99078
omega (dN/dS) = 0.05397
alpha (gamma, K = 1) = 0.50000
rate: 1.00000
freq: 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
11..12 0.156 964.7 283.3 0.0540 0.0105 0.1941 10.1 55.0
12..13 1.100 964.7 283.3 0.0540 0.0736 1.3642 71.0 386.5
13..1 1.754 964.7 283.3 0.0540 0.1174 2.1757 113.3 616.4
13..14 0.191 964.7 283.3 0.0540 0.0128 0.2366 12.3 67.0
14..15 0.176 964.7 283.3 0.0540 0.0118 0.2182 11.4 61.8
15..8 1.262 964.7 283.3 0.0540 0.0845 1.5648 81.5 443.3
15..10 1.087 964.7 283.3 0.0540 0.0728 1.3487 70.2 382.1
14..9 0.838 964.7 283.3 0.0540 0.0561 1.0393 54.1 294.4
12..16 0.337 964.7 283.3 0.0540 0.0225 0.4174 21.7 118.3
16..2 0.388 964.7 283.3 0.0540 0.0260 0.4819 25.1 136.5
16..3 0.395 964.7 283.3 0.0540 0.0264 0.4893 25.5 138.6
11..17 0.053 964.7 283.3 0.0540 0.0035 0.0652 3.4 18.5
17..4 0.699 964.7 283.3 0.0540 0.0468 0.8669 45.1 245.6
17..5 0.405 964.7 283.3 0.0540 0.0271 0.5027 26.2 142.4
11..18 0.124 964.7 283.3 0.0540 0.0083 0.1539 8.0 43.6
18..6 0.362 964.7 283.3 0.0540 0.0242 0.4488 23.4 127.1
18..7 0.387 964.7 283.3 0.0540 0.0259 0.4804 25.0 136.1
tree length for dN: 0.6503
tree length for dS: 12.0482
Time used: 0:21
Model 1: NearlyNeutral (2 categories)
TREE # 1: (((1, ((8, 10), 9)), (2, 3)), (4, 5), (6, 7)); MP score: 1337
lnL(ntime: 17 np: 21): -7278.490427 +0.000000
11..12 12..13 13..1 13..14 14..15 15..8 15..10 14..9 12..16 16..2 16..3 11..17 17..4 17..5 11..18 18..6 18..7
0.148379 0.954452 1.539041 0.096046 0.108899 1.146377 1.003676 0.781213 0.287087 0.344342 0.378612 0.014707 0.651881 0.395739 0.126780 0.356687 0.373514 2.464692 0.908267 0.051817 0.500000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 8.70743
(((1: 1.539041, ((8: 1.146377, 10: 1.003676): 0.108899, 9: 0.781213): 0.096046): 0.954452, (2: 0.344342, 3: 0.378612): 0.287087): 0.148379, (4: 0.651881, 5: 0.395739): 0.014707, (6: 0.356687, 7: 0.373514): 0.126780);
(((Pstutzeri_DSM: 1.539041, ((Paeruginosa_PAO1_flhF: 1.146377, Pfulva_12-X_flhF: 1.003676): 0.108899, Pmendocina_NK-01_flhF: 0.781213): 0.096046): 0.954452, (Pputida_GB-1_flhF: 0.344342, Pentomophila_L48_flhF: 0.378612): 0.287087): 0.148379, (Psyringae_DC3000_flhF: 0.651881, Pfluorescens_A506_flhF: 0.395739): 0.014707, (Pbrassicacearum_NFM421_flhF: 0.356687, Pprotegens_Pf-5_flhF: 0.373514): 0.126780);
Detailed output identifying parameters
kappa (ts/tv) = 2.46469
dN/dS (w) for site classes (K=2)
p: 0.90827 0.09173
w: 0.05182 1.00000
alpha (gamma, K = 2) = 0.90827
rate: 0.05182 1.00000
freq: 0.90827 0.09173
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
11..12 0.148 954.9 293.1 0.1388 0.0201 0.1450 19.2 42.5
12..13 0.954 954.9 293.1 0.1388 0.1295 0.9329 123.6 273.4
13..1 1.539 954.9 293.1 0.1388 0.2088 1.5042 199.4 440.9
13..14 0.096 954.9 293.1 0.1388 0.0130 0.0939 12.4 27.5
14..15 0.109 954.9 293.1 0.1388 0.0148 0.1064 14.1 31.2
15..8 1.146 954.9 293.1 0.1388 0.1555 1.1204 148.5 328.4
15..10 1.004 954.9 293.1 0.1388 0.1362 0.9810 130.0 287.5
14..9 0.781 954.9 293.1 0.1388 0.1060 0.7635 101.2 223.8
12..16 0.287 954.9 293.1 0.1388 0.0389 0.2806 37.2 82.2
16..2 0.344 954.9 293.1 0.1388 0.0467 0.3366 44.6 98.6
16..3 0.379 954.9 293.1 0.1388 0.0514 0.3700 49.0 108.5
11..17 0.015 954.9 293.1 0.1388 0.0020 0.0144 1.9 4.2
17..4 0.652 954.9 293.1 0.1388 0.0884 0.6371 84.4 186.7
17..5 0.396 954.9 293.1 0.1388 0.0537 0.3868 51.3 113.4
11..18 0.127 954.9 293.1 0.1388 0.0172 0.1239 16.4 36.3
18..6 0.357 954.9 293.1 0.1388 0.0484 0.3486 46.2 102.2
18..7 0.374 954.9 293.1 0.1388 0.0507 0.3651 48.4 107.0
Time used: 0:48
Model 2: PositiveSelection (3 categories)
TREE # 1: (((1, ((8, 10), 9)), (2, 3)), (4, 5), (6, 7)); MP score: 1337
lnL(ntime: 17 np: 23): -7278.490427 +0.000000
11..12 12..13 13..1 13..14 14..15 15..8 15..10 14..9 12..16 16..2 16..3 11..17 17..4 17..5 11..18 18..6 18..7
0.148379 0.954452 1.539042 0.096045 0.108899 1.146378 1.003676 0.781213 0.287087 0.344343 0.378611 0.014707 0.651881 0.395739 0.126780 0.356687 0.373514 2.464697 0.908267 0.091733 0.051817 12.874700 0.908267
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 8.70743
(((1: 1.539042, ((8: 1.146378, 10: 1.003676): 0.108899, 9: 0.781213): 0.096045): 0.954452, (2: 0.344343, 3: 0.378611): 0.287087): 0.148379, (4: 0.651881, 5: 0.395739): 0.014707, (6: 0.356687, 7: 0.373514): 0.126780);
(((Pstutzeri_DSM: 1.539042, ((Paeruginosa_PAO1_flhF: 1.146378, Pfulva_12-X_flhF: 1.003676): 0.108899, Pmendocina_NK-01_flhF: 0.781213): 0.096045): 0.954452, (Pputida_GB-1_flhF: 0.344343, Pentomophila_L48_flhF: 0.378611): 0.287087): 0.148379, (Psyringae_DC3000_flhF: 0.651881, Pfluorescens_A506_flhF: 0.395739): 0.014707, (Pbrassicacearum_NFM421_flhF: 0.356687, Pprotegens_Pf-5_flhF: 0.373514): 0.126780);
Detailed output identifying parameters
kappa (ts/tv) = 2.46470
dN/dS (w) for site classes (K=3)
p: 0.90827 0.09173 0.00000
w: 0.05182 1.00000 12.87470
(note that p[2] is zero)
alpha (gamma, K = 3) = 0.90827
rate: 0.05182 1.00000 12.87470
freq: 0.90827 0.09173 0.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
11..12 0.148 954.9 293.1 0.1388 0.0201 0.1450 19.2 42.5
12..13 0.954 954.9 293.1 0.1388 0.1295 0.9329 123.6 273.4
13..1 1.539 954.9 293.1 0.1388 0.2088 1.5042 199.4 440.9
13..14 0.096 954.9 293.1 0.1388 0.0130 0.0939 12.4 27.5
14..15 0.109 954.9 293.1 0.1388 0.0148 0.1064 14.1 31.2
15..8 1.146 954.9 293.1 0.1388 0.1555 1.1204 148.5 328.4
15..10 1.004 954.9 293.1 0.1388 0.1362 0.9810 130.0 287.5
14..9 0.781 954.9 293.1 0.1388 0.1060 0.7635 101.2 223.8
12..16 0.287 954.9 293.1 0.1388 0.0389 0.2806 37.2 82.2
16..2 0.344 954.9 293.1 0.1388 0.0467 0.3366 44.6 98.6
16..3 0.379 954.9 293.1 0.1388 0.0514 0.3700 49.0 108.5
11..17 0.015 954.9 293.1 0.1388 0.0020 0.0144 1.9 4.2
17..4 0.652 954.9 293.1 0.1388 0.0884 0.6371 84.4 186.7
17..5 0.396 954.9 293.1 0.1388 0.0537 0.3868 51.3 113.4
11..18 0.127 954.9 293.1 0.1388 0.0172 0.1239 16.4 36.3
18..6 0.357 954.9 293.1 0.1388 0.0484 0.3486 46.2 102.2
18..7 0.374 954.9 293.1 0.1388 0.0507 0.3651 48.4 107.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: Pstutzeri_DSM)
Pr(w>1) post mean +- SE for w
78 Q 0.566 2.749 +- 2.833
81 A 0.605 2.857 +- 2.879
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.539 0.058 0.047 0.047 0.048 0.050 0.051 0.052 0.053 0.054
Posterior for p0-p1 (see the ternary graph)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.740
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.250
sum of density on p0-p1 = 1.000000
Time used: 2:39