FleN unique align

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Revision as of 17:13, 16 July 2013 by imported>Rayrah (Created page with "<pre> CLUSTAL W (1.81) multiple sequence alignment Pstutzeri_DSM10701_fleN ------------------------------------------gtgactggcggcaagggt Pmendocina_NK-01_fleN -------------...")
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CLUSTAL W (1.81) multiple sequence alignment


Pstutzeri_DSM10701_fleN ------------------------------------------gtgactggcggcaagggt
Pmendocina_NK-01_fleN   ------------------atgcatcccgtacaggtgatcgcggtgaccggcggcaaaggt
Pfulva_12-X_fleN        ---------atgggt---atgcatcccgtacaggtgatcgcggtgaccggcggcaaaggc
Paeruginosa_PAO1_fleN   atgaagcagatgggtagcatgcatcccgtacaggtgatcgcagtaactggcggcaagggc
Pputida_GB-1_fleN       ---------atgggtagcatgcatcccgtacaggtgatcgccgtgaccggcggcaaaggt
Pentomophila_L48_fleN   ---------atgggtagcatgcatcccgtacaggtgatcgccgtgaccggtggcaaaggt
Psyringae_pv.           ------------------atgcatcccgtacaggttatcgcggtgaccggtggcaaaggt
Pbrassicacearum_subsp.  ---------atgggcagcatgcatcccgtacaggtgatcgcggtgaccggcggcaaaggt
Pfluorescens_A506_fleN  ---------atgggcagcatgcatcccgtacaggtgatcgcggtgaccggcggcaaaggt
Pprotegens_Pf-5_fleN    ---------atgggcagcatgcatcccgtacaggtgattgcggtgaccggcggcaaaggt
                                                                  ** ** ** ***** ** 


Pstutzeri_DSM10701_fleN ggcgttggcaagaccaacgtgtcggtcaatctggccttggcgctggccgatctggggcgc
Pmendocina_NK-01_fleN   ggcgtcggcaagaccaatgtgtcggtgaatctgtccatggccctggccgatctcggccgt
Pfulva_12-X_fleN        ggcgttggcaagaccaatgtgtcggtgaacttgtcgctggcactggccgatcttggtcgg
Paeruginosa_PAO1_fleN   ggcgtcggcaagaccaatgtgtcggtgaacctggcactggctctggccgatctcggccgt
Pputida_GB-1_fleN       ggcgtcggcaagactaacgtttcagtgaacttgtccctggcgctggccgagcttggccgc
Pentomophila_L48_fleN   ggcgtcggcaagactaacgtttcagtgaacctgtccctggcgctggccgaactcggccgc
Psyringae_pv.           ggcgtcggtaagactaacgtgtcagtgaacctatcactggccctcgccgagcttggccgg
Pbrassicacearum_subsp.  ggcgtcgggaagactaacgtgtcagtgaacttgtccctggctctggcagagcttggccga
Pfluorescens_A506_fleN  ggcgtcgggaaaactaacgtgtcagtgaatttgtccctggccctggcagagcttggccgt
Pprotegens_Pf-5_fleN    ggcgtcggcaagactaatgtgtcagtgaacttgtccctggctctggctgagctcggccgg
                        ***** ** ** ** ** ** ** ** **  *  *  **** ** ** ** ** ** ** 


Pstutzeri_DSM10701_fleN cgggtggttctgctcgacgccgacctcgggctggccaacgtcgacgtgctgctgggcctg
Pmendocina_NK-01_fleN   cgggtaatgctgatggatgccgacctgggcctggccaatgtcgacgtgctgctgggtttg
Pfulva_12-X_fleN        cgcgtcatgctcatggatgccgacttgggtctggccaacgtcgacgtgctgctcggcctg
Paeruginosa_PAO1_fleN   cgcgtcatgctgctggatgccgacctcggcctggccaacgtcgacgtcctgctgggactc
Pputida_GB-1_fleN       agggtcatgctgctggacgccgacctgggcctggccaatgtcgacgtgttgctgggcctt
Pentomophila_L48_fleN   cgggtcatgctgctggacgccgacctgggcctggccaatgtcgacgtactgctgggcctg
Psyringae_pv.           cgcgtcatgctgctggatgccgatcttggcctggccaatgtcgacgttctgcttgggctg
Pbrassicacearum_subsp.  cgggtcatgctgctggacgccgacctgggcctggcgaacgtcgacgtgttgttggggctt
Pfluorescens_A506_fleN  cgcgtcatgctgctggatgctgacctgggcttggcgaacgtggacgttctcctggggctg
Pprotegens_Pf-5_fleN    cgggtcttgctgctggatgccgacctgggactggccaatgtcgatgtcctgctgggcctg
                         * **  * **  * ** ** **  * **  **** ** ** ** **  *  * **  * 


Pstutzeri_DSM10701_fleN aataccaagcgcaccctggccgacgtgatcgccggggagtgcgatctgcgcgatgtgctc
Pmendocina_NK-01_fleN   acgccgaagcgcacgctggccgatgtcattgcgggcgaatgcgacctgcgcgatgtcctg
Pfulva_12-X_fleN        accgccaagcgcaccctcgccgacgtgatcgacggtgagtgcgatctgcgcgacgtagtg
Paeruginosa_PAO1_fleN   acgcccaagcgcaccctggccgacgtgatcgagggacgctgcgaactgcgcgatgtcctc
Pputida_GB-1_fleN       acccccaaacgtaccctggccgatgtcatcgaagggcgctgcgagctgcgtgatgtgatg
Pentomophila_L48_fleN   acgcccaagcacaccctggccgacgtcatcgaagggcgctgcgagctgcgcgacgtgctg
Psyringae_pv.           acgcctaaacgcacgcttgccgatgtgatagagggtcgctgtgagttgcgcgacgttctg
Pbrassicacearum_subsp.  acacccaaacgcacgctggcggacgtgattgaagggcgctgtgagctgcgtgacgtgttg
Pfluorescens_A506_fleN  acacccaaacataccctggccgatgtgatcgagggccgctgcgagctgcgcgatgtgctg
Pprotegens_Pf-5_fleN    actcccaaacataccctggccgacgtcatcgagggccgttgcgagctgcgcgatgtgctg
                        *   * ** *  ** ** ** ** ** ** *  **    ** **  **** ** **  * 


Pstutzeri_DSM10701_fleN atccaggggcccggcggcatacgcatcgtgccggccgcttccggcgcacagagcatggtg
Pmendocina_NK-01_fleN   ctgcaggggccgggtggcgttcgtatcgtgccagcagcgtccggtacgcagagcatggtc
Pfulva_12-X_fleN        ctgcaggggcccggcggcattcgtatcgtgccggccgcttccggtactcaagccatggtg
Paeruginosa_PAO1_fleN   ctcctcggtcccggtggcgtgcgcatcgttcccgcggcctccggcacgcagagcatggtg
Pputida_GB-1_fleN       ctgcagggccctggcggtgtgcgcatcgtgccggcagcgtcgggtacccagagcatggtg
Pentomophila_L48_fleN   ctgcaggggcctggcggggtacgcatcgtgccggccgcttccggcacccagagcatggtg
Psyringae_pv.           ttgcaggggccgggcggggttcgtatcgtgcctgcggcctctggcacccagagcatggtg
Pbrassicacearum_subsp.  ttgcaggggccgggcgggattcgcatcgtgccggctgcctcaggcacccagagcatggtt
Pfluorescens_A506_fleN  ctccagggccctggtggcattcgcatcgtgccggcggcctcgggcacccagagcatggtg
Pprotegens_Pf-5_fleN    ctccagggccctggaggcatccgcatcgtaccggccgcctcgggcacccagagcatggtg
                         * *  ** ** ** **  * ** ***** ** ** ** ** **  * **   ****** 


Pstutzeri_DSM10701_fleN cagctgtcctcgctgcagcactcggggctgatccaggcattcagcgatatcggcgacgac
Pmendocina_NK-01_fleN   agccttacgccgatgcagcatgcaggcctgatccaggcgttcagcgatatcagtgagaac
Pfulva_12-X_fleN        cagctcacgcccatgcagcacgccggcctgatccaggccttcagcgacatcagcgacaac
Paeruginosa_PAO1_fleN   cacctctcgccgatgcagcatgcggggctgatccaggcgttcagcgatatcagcgacaac
Pputida_GB-1_fleN       cacctggccccggcccagcatgccgggctgatccaggcgttcagtgaaatcggcgacaac
Pentomophila_L48_fleN   cacctggcgccggcccagcatgccggcctgatccaggcgttcagcgagatcggcgacaac
Psyringae_pv.           cacctgtcaccggcccagcatgccggccttattcaggcgttcagcgagattggcgacaac
Pbrassicacearum_subsp.  cacctgaccccggcccagcacgcgggcctgatccaggctttcagcgacatcggcgacaac
Pfluorescens_A506_fleN  cacctgagccccgcgcagcatgccgggctgatccaggcgttcagcgacatcggcgacaac
Pprotegens_Pf-5_fleN    cacctgagccccgcgcagcacgctggcctgatccaggccttcagcgatatcggcgacaat
                           **     *    *****  * ** ** ** ***** ***** ** **  * **  * 


Pstutzeri_DSM10701_fleN ctcgatgtgctggtcatcgacactgccgcgggcatcggcgatggcgtcatcagctttgtg
Pmendocina_NK-01_fleN   ctcgatgtgctggtgatcgatacggccgcggggatcggtgatgcagtggtcagcttcgtg
Pfulva_12-X_fleN        ctcgatgtgcttatcgtcgataccgctgccggcatcggcgattcggtggtcagcttcgtg
Paeruginosa_PAO1_fleN   ctcgatgtcctggtcgtcgacactgccgccgggatcggcgattcggtggtcagtttcgtc
Pputida_GB-1_fleN       ctcgatgtgctggtgatcgataccgctgcgggtatcggcgagtcggtggtcagtttcgtt
Pentomophila_L48_fleN   ctcgatgtgctggtgatcgacaccgctgcgggtattggtgactcggtagtcagttttgtc
Psyringae_pv.           ctcgatgtgctggtgatcgataccgctgccggtatcggcgagtcggtggtcagcttcgtg
Pbrassicacearum_subsp.  ctcgatgtgctggtgatcgacaccgcagccggtatcggtgactcggtcgtcagtttcgtc
Pfluorescens_A506_fleN  ctcgacgtgctggtgatcgacaccgccgccgggatcggcgagtcggtggtcagctttgtg
Pprotegens_Pf-5_fleN    ctcgatgtgctggtgatcgacaccgctgcgggtattggtgactcggtagtcagctttgtc
                        ***** ** **  *  **** ** ** ** ** ** ** **    **  **** ** ** 


Pstutzeri_DSM10701_fleN cgggccgcccaggaagtcctgctggtggtgaccgacgagcccacctcgatcaccgatgcc
Pmendocina_NK-01_fleN   cgcgcggcgcaggagatcctcgtggtggtctgcgacgagcccacgtcgatcaccgacgcc
Pfulva_12-X_fleN        cgcgcagcccaggaagtgctggtggtggtgtgcgacgaaccgacgtccatcaccgatgcc
Paeruginosa_PAO1_fleN   cgcgccgcgcaggaggtgctgctggtcgtctgcgacgagccgacctcgatcaccgatgcc
Pputida_GB-1_fleN       cgcgccgcccaggaagtcctgctggtggtgtgcgatgagcctacctcgatcaccgacgct
Pentomophila_L48_fleN   cgcgccgcgcaggaagtgctgttggtggtgtgcgacgagcccacctcgatcaccgacgcc
Psyringae_pv.           cgcgccgctcaggaagtgctgctggtggtgtgcgacgagcccacgtcgatcaccgatgcg
Pbrassicacearum_subsp.  cgcgcggcccaggaagtgctgctggtggtctgcgacgaaccgacgtccatcaccgacgcc
Pfluorescens_A506_fleN  cgcgcagcgcaggaagtgctgttggtggtgtgcgacgagcccacctcgatcaccgatgcc
Pprotegens_Pf-5_fleN    cgcgcggcccaggaagtactgctggtggtgtgcgacgagccgacctcgatcacggacgcc
                        ** ** ** *****  * **  **** **   *** ** ** ** ** ***** ** ** 


Pstutzeri_DSM10701_fleN tatgccttgatcaaattgctcaaccgcgactacggtatcaacaggtttcgcgtgctggcc
Pmendocina_NK-01_fleN   tacgcgctgatcaagctgctcaatcgtgatcatggcatcagccgcttccgcgttctggcc
Pfulva_12-X_fleN        tacgccctgatcaaactgctcaatcgcgatcacggcatgaatcgtttccgggtgctcgcc
Paeruginosa_PAO1_fleN   tacgccctgatcaaactgctcaaccgcgaccacggcatgacccgcttccgggtcctggcc
Pputida_GB-1_fleN       tacgccctgatcaagctgctcaaccgcgactacggcatgaaccgtttccgtgtgttggcc
Pentomophila_L48_fleN   tacgccctgatcaagctgctcaaccgcgattacggcatgaatcgtttccgcgtgctggcc
Psyringae_pv.           tacgccctgatcaaactgctcaatcgcgactacggcatgaaccgtttccgggtgctggcc
Pbrassicacearum_subsp.  tatgccctgatcaagttgcttaaccgcgactatggcatgaaccgcttccgcgtcctggcc
Pfluorescens_A506_fleN  tacgcgctgatcaaactgcttaaccgtgactacggcatgaatcgcttccgcgtgctggcc
Pprotegens_Pf-5_fleN    tacgcgctgatcaagctgctcaaccgcgactacggcatgaaccgtttccgggtcctggcc
                        ** **  *******  **** ** ** **  * ** ** *   * ** ** **  * ***


Pstutzeri_DSM10701_fleN aacatggcccatgcaccgcaggaaggtcgtaacctgttcgccaagctcaccaacgtgacc
Pmendocina_NK-01_fleN   aacatggcgcacagcccgcaggaagggcgcaatctctttgctaagctgaccaaggtgacg
Pfulva_12-X_fleN        aacatggcgcacagcccccaggaaggtcgcaatctctttgctaagctgaccaaagtgacc
Paeruginosa_PAO1_fleN   aacatggcccacagcccgcaggaaggacgcaacctgttcgccaaactgaccaaggtcact
Pputida_GB-1_fleN       aacatggcgcagagcccgcaagaagggcgcaacctgttcgccaagctgaccaaagtcacc
Pentomophila_L48_fleN   aacatggcgcagagcccgcaggaagggcgcaacctgtttgccaagttgaccaaggtcacg
Psyringae_pv.           aacatggcccagagcccgcaggaaggacgcaacctgttcgccaaactcaccaaagtgact
Pbrassicacearum_subsp.  aacatggcccagagcccgcaggaaggacgcaacctgttcgccaagttgacaaaggtcacg
Pfluorescens_A506_fleN  aacatggcccagagcccgcaggaagggcgcaacctgttcgccaagttgaccaaggtcacg
Pprotegens_Pf-5_fleN    aacatggctcagagccctcaggaaggtcgcaacctgtttgcaaaattgaccaaggtcacg
                        ******** **    ** ** ***** ** ** ** ** ** **  * ** ** ** ** 


Pstutzeri_DSM10701_fleN gagcgttttctcgacgtggcgctgcagtatgtcggtgccgtgccgtacgatgaaacggtg
Pmendocina_NK-01_fleN   gatcgcttcctcgatgtcgccctgcagtacgtcggcgccgtgccctacgatgagtgtgtg
Pfulva_12-X_fleN        gaccgttttctggatgtcgcgctgcagtacgtgggcgcggtgccgtacgacgaatcggtt
Paeruginosa_PAO1_fleN   gaccgtttcctcgacgtcgcactacagtatgtaggtgtcatcccttacgacgagtcggta
Pputida_GB-1_fleN       gaccgcttccttgacgttgccctgcagtacgtgggcgccgtgccgtacgacgagtgcgtg
Pentomophila_L48_fleN   gatcgcttcctcgacgtcgccctacaatacgtcggcgccgtgccttacgacgaatgtgtg
Psyringae_pv.           gatcgttttcttgatgttgccctgcaatatgtaggtgccgtgccgtacgacgagtgcgtg
Pbrassicacearum_subsp.  gatcgcttcctggacgtcgccctacaatacgtcggcgcagtgccttacgacgaaagcgta
Pfluorescens_A506_fleN  gatcgcttcctcgatgtggctttacaatacgtcggcgcagttccctatgacgagtgtgtg
Pprotegens_Pf-5_fleN    gatcgcttcctggacgtggccttacaatacgtcggcgcagttccctacgacgaaagcgta
                        ** ** ** ** ** ** **  * ** ** ** ** *   * ** ** ** **    ** 


Pstutzeri_DSM10701_fleN cgcaaggcggtgcagaagcagcgggccgtttacgaagcctacccgcgttccaaatgcgcg
Pmendocina_NK-01_fleN   cgtaaagccgtgcagaaacagcgcgcagtctatgaagccttccctcgctccaagtgcgcc
Pfulva_12-X_fleN        cgcaaggccgtacagaaacagcgtgcggtgtatgaggcgttccctcgttcgaagtgcgcg
Paeruginosa_PAO1_fleN   cgcaaggccgtgcagaaacagcgagccgtatacgaggcattcccccgctcgaaggcgtcc
Pputida_GB-1_fleN       cgcaaggcggtgcagaaacagcgcgccgtctacgaagccttccctcgctccaagtgtgcg
Pentomophila_L48_fleN   cgcaaggcggtgcagaagcagcgggcggtctacgaggccttccctcggtccaagtgcgcg
Psyringae_pv.           cgcaaggcggtacaaaagcagcgtgccgtctacgaagcattcccgcgttccaaatgtgcg
Pbrassicacearum_subsp.  cgcaaggccgtccagaagcaacgtgccgtttatgaagcctttccacgctccaaatgcgcg
Pfluorescens_A506_fleN  cgcaaggccgtgcaaaagcagcgtgcggtctacgaagcgttccctcgttcgaaatgcgca
Pprotegens_Pf-5_fleN    cgcaaggccgtgcaaaagcagcgtgcggtctatgaagcctttcctcgttcgaagtgtgca
                        ** ** ** ** ** ** ** ** ** ** ** ** ** *  ** ** ** **     * 


Pstutzeri_DSM10701_fleN ctggccttcaaggccatcgcgcagaagatcgacacctggccgctgccggccacgccgcgc
Pmendocina_NK-01_fleN   ctggcgttcaaggcgatagctcagaaggttgacacctggccgctgccggccaatccccgt
Pfulva_12-X_fleN        ctggcgttcaaggcgattgcccagaaggtcgatgcatggcccttgccggccaacccgcgt
Paeruginosa_PAO1_fleN   ctggccttcaaggcggtcgcgcagaaggtcgatagctggccgctgccggccaacccgcgc
Pputida_GB-1_fleN       ctggccttcaaggcgattgcgcaaaaggtcgacagctggccgctgccggccaacccgcgc
Pentomophila_L48_fleN   ctggccttcaaggccatcgcgcagaaggtcgacagctggccgctgcctgccaacccgcgc
Psyringae_pv.           ctggctttcaaggccattgcccagaaggttgatacctggccgttgccagccaacccgcgg
Pbrassicacearum_subsp.  ctggcgttcaaggccatcgcccagaaggtcgatacctggccactgccggccaaccctcgc
Pfluorescens_A506_fleN  ctggcgttcaaggccattgcccagaaggtcgatacctggccgttgcccgccaacccgcgg
Pprotegens_Pf-5_fleN    ttggcgttcaaggccatcgcgcaaaaagtcgatacctggccgttgccggcgaacccacgc
                         **** ********  * ** ** **  * **    *****  **** ** *  ** ** 


Pstutzeri_DSM10701_fleN gggcaccttgaattctttgtggaacgcctcgtcaggccggcc---gcagacacccacgaa
Pmendocina_NK-01_fleN   ggccatctggagtttttcgtcgagcgtctggtgcagcaaccgactgcagactcggccgta
Pfulva_12-X_fleN        ggccatctggagtttttcgtggagcgcctggtgcaacaaccgactgcagacacggctgta
Paeruginosa_PAO1_fleN   gggcacctggagttcttcgtcgaacgactggtccaacaccccgcgacaggttcggccgta
Pputida_GB-1_fleN       ggccacctggagttctttgtcgagcgtctggtgcaacccaccagcgcgggacccgtgcta
Pentomophila_L48_fleN   ggacacctggagtttttcgtcgagcgtctggtgcagcccaccagcgcggggccagtgcta
Psyringae_pv.           ggtcatctcgagttcttcgttgagcgactcgttcaccagaccagtgcggggcctgtgcaa
Pbrassicacearum_subsp.  gggcatctggaatttttcgtcgagcgtcttgtgcaacaaaca---gcagggcccgtgcta
Pfluorescens_A506_fleN  gggcatctggagtttttcgtcgagcgtttggtgcatcagacgagcgcaggaccggtgcta
Pprotegens_Pf-5_fleN    gggcatctggagttttttgtcgagcggctagtgcatcaaaca---gcgggaccggtgcta
                        ** ** ** ** ** ** ** ** **  * **    *   *     * *   *      *