Hackathon 2020

Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422

Photos

• 

  Group shot

• 

  Team annotation:
  Jerry, Desiree, Raman

• 

  Team Database & Website:
  Saymon, Lia, Edgar

Teams

• Genome collection: Edgar, Brian
• Genbank file parsing: Edgar, Lia
• Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
• Database and database tools: Saymon and Lia
• Genome website development: Edgar & Lia
• Epidemiology model & app development: Brian, Chris, Junho

Links

1. Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
2. ncoV website from nextstrain: https://nextstrain.org/ncov

GISAID download & preprosess

Downloading

1. Step 1
2. Step 2
   1. Step 2.1

• Jan 30: Hackathon announced
• Feb 6
  • Genome sequences downloaded and parsed (Edgar)
  • Database design and population (Lia)