Summer 2021

Project 1. HIV compartmentalized evolution

• Participants
• Reading list
  • HIV compartmentalized evolution: Evering et al (2014)

Project 2. Natural Language models of proteins

• Participants
• Reading list
  • Strodthoff et al (2020). Bioinformatics. UDSMProt: universal deep sequence models for protein classification. Source code on Github
  • Rives et al (2021). PNAS. Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences. Github repository