NY-RaMP Mentoring

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Cohort 1, August 2024 - June 2025

Readings and Practices

  • R/Rstudio Workshops
  • Computing Skills for Biologists
  • Akther et al (2024)
  • Phylogenetics for the faint of heart

Project 1. MDM2 proteomics (Collaboration with Bargonetti lab)

  1. Data visualization
  2. Gene clustering
  3. Pathway enrichment analysis
  4. Shiny App

Project 2. Borrelia vlsE database

  1. Data extraction
  2. Gene trees
  3. vls Database

Project 3. Borrelia pan-genomics

  1. Data extraction
  2. Pan-genome database
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