Biol425 2011: Revision history

10 May 2011

• curprev 02:0502:05, 10 May 2011‎ imported>Cmartin‎ 25,401 bytes +2‎ →‎May 7
• curprev 02:0402:04, 10 May 2011‎ imported>Cmartin‎ 25,399 bytes +1‎ →‎May 7
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• curprev 02:0202:02, 10 May 2011‎ imported>Cmartin‎ 25,399 bytes +18‎ →‎May 7
• curprev 02:0102:01, 10 May 2011‎ imported>Cmartin‎ 25,381 bytes +2‎ →‎May 7
• curprev 02:0002:00, 10 May 2011‎ imported>Cmartin‎ 25,379 bytes +3‎ →‎May 7
• curprev 01:5801:58, 10 May 2011‎ imported>Cmartin‎ 25,376 bytes +1,080‎ →‎May 7
• curprev 01:0901:09, 10 May 2011‎ imported>Yozen‎ 24,296 bytes +315‎ →‎Useful Links: Added links to install R on your home machine, if you so choose

7 May 2011

• curprev 01:1801:18, 7 May 2011‎ imported>Cmartin‎ 23,981 bytes +83‎ →‎May 7

30 April 2011

• curprev 15:0015:00, 30 April 2011‎ imported>Yozen‎ 23,898 bytes 0‎ →‎April 30: Rearranged class order
• curprev 14:5914:59, 30 April 2011‎ imported>Yozen‎ 23,898 bytes 0‎ →‎April 16: Changed assignment to limit data produced.
• curprev 13:2313:23, 30 April 2011‎ imported>Yozen‎ 23,898 bytes +189‎ →‎April 30: Added R Basics link
• curprev 13:1213:12, 30 April 2011‎ imported>Cmartin‎ 23,709 bytes −6‎ →‎April 30
• curprev 13:1213:12, 30 April 2011‎ imported>Cmartin‎ 23,715 bytes −3‎ →‎April 30
• curprev 13:1213:12, 30 April 2011‎ imported>Cmartin‎ 23,718 bytes +61‎ →‎April 30

21 April 2011

• curprev 03:2403:24, 21 April 2011‎ imported>Cmartin‎ 23,657 bytes +10‎ →‎April 16
• curprev 03:2303:23, 21 April 2011‎ imported>Cmartin‎ 23,647 bytes +2‎ →‎April 16
• curprev 03:2103:21, 21 April 2011‎ imported>Cmartin‎ 23,645 bytes +44‎ →‎April 16
• curprev 03:1903:19, 21 April 2011‎ imported>Cmartin‎ 23,601 bytes −3‎ →‎April 16
• curprev 03:1403:14, 21 April 2011‎ imported>Cmartin‎ 23,604 bytes −45‎ →‎April 16
• curprev 03:1103:11, 21 April 2011‎ imported>Cmartin‎ 23,649 bytes +2‎ →‎April 16

17 April 2011

• curprev 01:1401:14, 17 April 2011‎ imported>Yozen‎ 23,647 bytes +111‎ →‎April 16: Clarified that output filename should contain the chosen strain, for the extra challenge portion.

16 April 2011

• curprev 22:1622:16, 16 April 2011‎ imported>Yozen‎ 23,536 bytes +1,654‎ →‎Course Schedule (All Saturdays): Added assignment 7. No word yet on assignment from Che.
• curprev 02:4002:40, 16 April 2011‎ imported>Yozen‎ 21,882 bytes +153‎ →‎Useful Links: Added SQL primer

9 April 2011

• curprev 01:3501:35, 9 April 2011‎ imported>Cmartin‎ 21,729 bytes +43‎ →‎April 9

5 April 2011

• curprev 13:1213:12, 5 April 2011‎ imported>Cmartin‎ 21,686 bytes −5‎ →‎April 2
• curprev 13:1113:11, 5 April 2011‎ imported>Cmartin‎ 21,691 bytes +87‎ →‎April 2
• curprev 13:1013:10, 5 April 2011‎ imported>Cmartin‎ 21,604 bytes +45‎ →‎April 2
• curprev 13:0613:06, 5 April 2011‎ imported>Cmartin‎ 21,559 bytes −7‎ →‎April 2

2 April 2011

• curprev 14:5014:50, 2 April 2011‎ imported>Yozen‎ 21,566 bytes +85‎ →‎Course Schedule (All Saturdays): Added some markup for prettifying purposes
• curprev 14:4714:47, 2 April 2011‎ imported>Yozen‎ 21,481 bytes +133‎ →‎April 2: Added "Tree Thinking" Puzzles document link
• curprev 02:3902:39, 2 April 2011‎ imported>Cmartin‎ 21,348 bytes +43‎ →‎April 2

22 March 2011

• curprev 03:1803:18, 22 March 2011‎ imported>Yozen‎ 21,305 bytes +204‎ →‎Useful Links: Added BioPerl table I made to links

19 March 2011

• curprev 15:5515:55, 19 March 2011‎ imported>Yozen‎ 21,101 bytes +182‎ →‎Useful Links
• curprev 04:2404:24, 19 March 2011‎ imported>Yozen‎ 20,919 bytes +284‎ →‎Perl Help
• curprev 02:5902:59, 19 March 2011‎ imported>Yozen‎ m 20,635 bytes −1‎ →‎Unix Tutorials: Changed link to UNIX tutorial. This link is not password-protected (Thanks, Chris!)

12 March 2011

• curprev 16:1716:17, 12 March 2011‎ imported>Cmartin‎ 20,636 bytes +42‎ →‎March 12

10 March 2011

• curprev 16:0516:05, 10 March 2011‎ imported>Yozen‎ 20,594 bytes +16‎ Changed schedule: Spring recess is from Sun Apr 17 to Tue Apr 26, meaning no class on Apr 23, NOT Apr 02 as previously stated.
• curprev 03:2503:25, 10 March 2011‎ imported>Yozen‎ 20,578 bytes +48‎ →‎March 5: Hopefully made it clearer that you need to read Ch 3 for next class!
• curprev 03:2103:21, 10 March 2011‎ imported>Yozen‎ m 20,530 bytes 0‎ →‎March 5: lp17.fas is the correct file name, not .seq (Thanks Mary Ellen!)
• curprev 03:0803:08, 10 March 2011‎ imported>Yozen‎ 20,530 bytes +372‎ Added some BioPerl links and a tutorial on installing bioperl-live on your Mac!

8 March 2011

• curprev 14:4414:44, 8 March 2011‎ imported>Yozen‎ m 20,158 bytes +7‎ →‎March 5: Fixed typo (Thanks, Elda!)
• curprev 14:0814:08, 8 March 2011‎ imported>Cmartin‎ 20,151 bytes −6‎ →‎March 5
• curprev 14:0514:05, 8 March 2011‎ imported>Cmartin‎ 20,157 bytes −6‎ →‎March 5
• curprev 14:0414:04, 8 March 2011‎ imported>Cmartin‎ 20,163 bytes +2‎ →‎March 5
• curprev 14:0414:04, 8 March 2011‎ imported>Cmartin‎ 20,161 bytes −7‎ →‎March 5
• curprev 14:0314:03, 8 March 2011‎ imported>Cmartin‎ 20,168 bytes +28‎ →‎March 5
• curprev 14:0214:02, 8 March 2011‎ imported>Cmartin‎ 20,140 bytes +33‎ →‎March 5

7 March 2011

• curprev 00:2900:29, 7 March 2011‎ imported>Yozen‎ m 20,107 bytes +49‎ →‎March 5
• curprev 00:2800:28, 7 March 2011‎ imported>Yozen‎ 20,058 bytes 0‎ →‎March 5
• curprev 00:2800:28, 7 March 2011‎ imported>Yozen‎ 20,058 bytes +296‎ →‎March 5: Added more stuff...also now you can see the assignment...
• curprev 00:2000:20, 7 March 2011‎ imported>Yozen‎ 19,762 bytes +1,282‎ →‎March 5: Changed my mind again: edited to be simpler.

6 March 2011

• curprev 23:5823:58, 6 March 2011‎ imported>Yozen‎ 18,480 bytes −67‎ →‎March 12
• curprev 23:4823:48, 6 March 2011‎ imported>Yozen‎ 18,547 bytes +6‎ →‎March 5: Changed my mind: you need to learn something more...
• curprev 20:5320:53, 6 March 2011‎ imported>Yozen‎ m 18,541 bytes +94‎ →‎March 5: Just added links to Bioperl. Assignment coming soon.

5 March 2011

• curprev 03:5603:56, 5 March 2011‎ imported>Cmartin‎ 18,447 bytes +46‎ →‎March 5

3 March 2011

• curprev 17:4617:46, 3 March 2011‎ imported>Yozen‎ 18,401 bytes 0‎ →‎February 26: The file contains *nucleotide*, not *aa* sequence
• curprev 17:1417:14, 3 March 2011‎ imported>Yozen‎ 18,401 bytes +11‎ →‎February 26: Fixed FASTA format sample

2 March 2011

• curprev 18:1618:16, 2 March 2011‎ imported>Cmartin‎ 18,390 bytes −22‎ →‎March 26
• curprev 18:0918:09, 2 March 2011‎ imported>Cmartin‎ 18,412 bytes −99‎ →‎March 19
• curprev 18:0018:00, 2 March 2011‎ imported>Cmartin‎ 18,511 bytes +41‎ →‎March 5
• curprev 17:5917:59, 2 March 2011‎ imported>Cmartin‎ 18,470 bytes −105‎ →‎March 12
• curprev 17:5617:56, 2 March 2011‎ imported>Cmartin‎ 18,575 bytes +93‎ →‎March 12

27 February 2011

• curprev 23:0123:01, 27 February 2011‎ imported>Yozen‎ 18,482 bytes +2,886‎ →‎February 26: Added the assignment. Slides will be updated soon.

26 February 2011

• curprev 16:0316:03, 26 February 2011‎ imported>Yozen‎ m 15,596 bytes +30‎ →‎February 26: Added slides

25 February 2011

• curprev 03:0203:02, 25 February 2011‎ imported>Yozen‎ m 15,566 bytes +65‎ →‎February 19: Reminder that you have to log in to mysql before being able to run the glimmer programs.

24 February 2011

• curprev 20:2820:28, 24 February 2011‎ imported>Yozen‎ 15,501 bytes +14‎ →‎February 5: Forgot to say "source" before the .bashrc file. Somehow, no one told me about this :/
• curprev 20:2720:27, 24 February 2011‎ imported>Yozen‎ m 15,487 bytes +22‎ →‎February 19: Updated directory to *new* directory. OK because the files are the same. (Don't panic!)

21 February 2011

• curprev 23:2723:27, 21 February 2011‎ imported>Cmartin‎ 15,465 bytes +18‎ →‎February 19
• curprev 23:2523:25, 21 February 2011‎ imported>Cmartin‎ 15,447 bytes +566‎ →‎February 19

19 February 2011

• curprev 15:2415:24, 19 February 2011‎ imported>Cmartin‎ 14,881 bytes +47‎ →‎February 19

8 February 2011

• curprev 03:0703:07, 8 February 2011‎ imported>Yozen‎ 14,834 bytes +142‎ →‎Programming Assignment Expectations: Clarified that I want input as well as output. Clarified printing situation in lab.
• curprev 03:0503:05, 8 February 2011‎ imported>Yozen‎ 14,692 bytes +140‎ →‎February 5: Clarified some points on the more challenging homework

7 February 2011

• curprev 18:0918:09, 7 February 2011‎ imported>Yozen‎ 14,552 bytes +84‎ →‎February 5: Added reminder to follow guidelines/expectations.
• curprev 18:0618:06, 7 February 2011‎ imported>Yozen‎ 14,468 bytes +1,164‎ →‎Course Description: Added a programming assignment expectations subsection.
• curprev 15:0015:00, 7 February 2011‎ imported>Yozen‎ 13,304 bytes +321‎ →‎Useful Links: Organized links, added Dr. Weiss' CSCI132 course page.
• curprev 14:5614:56, 7 February 2011‎ imported>Yozen‎ 12,983 bytes +2,338‎ →‎February 5: Added Perl assignment. Updated slides coming soon.
• curprev 14:2014:20, 7 February 2011‎ imported>Cmartin‎ 10,645 bytes −6‎ →‎February 5

5 February 2011

• curprev 17:4417:44, 5 February 2011‎ imported>Yozen‎ 10,651 bytes +71‎ →‎February 5: Added first draft of new perl slides

3 February 2011

• curprev 18:0518:05, 3 February 2011‎ imported>Yozen‎ 10,580 bytes −586‎ →‎February 5: Changing homework, lesson plan (will be up soon)
• curprev 17:5017:50, 3 February 2011‎ imported>Yozen‎ 11,166 bytes +235‎ Clarified assignment from Jan 29. Clarified homework due dates.
• curprev 13:3913:39, 3 February 2011‎ imported>Cmartin‎ 10,931 bytes +52‎ →‎February 5

1 February 2011

• curprev 19:3419:34, 1 February 2011‎ imported>Yozen‎ m 10,879 bytes +168‎ →‎February 5: Added instruction to add custom .profile to user .bash_profile (needed to the tools we will use later)

31 January 2011

• curprev 20:3020:30, 31 January 2011‎ imported>Yozen‎ 10,711 bytes +683‎ Added Chrome extensions for RSS feeds, notice for how to track new changes.

30 January 2011

• curprev 02:3302:33, 30 January 2011‎ imported>Yozen‎ 10,028 bytes +312‎ Added "Useful Links"
• curprev 02:2502:25, 30 January 2011‎ imported>Yozen‎ m 9,716 bytes +81‎ →‎January 29: Link to anchor Useful Links section

29 January 2011

• curprev 17:3017:30, 29 January 2011‎ imported>Yozen‎ 9,635 bytes +218‎ →‎January 29: Added SSH tutorials
• curprev 15:4415:44, 29 January 2011‎ imported>Yozen‎ m 9,417 bytes +110‎ Not using T-Rex server
• curprev 05:1005:10, 29 January 2011‎ imported>Yozen‎ m 9,307 bytes 0‎ Fixed a comment.
• curprev 04:3304:33, 29 January 2011‎ imported>Yozen‎ 9,307 bytes +497‎ Added Che's grading scheme, converted to approx percent. Commented out some assignments, fixed assignments.

26 January 2011

• curprev 21:4621:46, 26 January 2011‎ imported>Yozen‎ m 8,810 bytes 0‎ Corrected room number to be the lab
• curprev 16:4416:44, 26 January 2011‎ imported>Yozen‎ m 8,810 bytes +121‎ Added assignment alet (remove soon)

25 January 2011

• curprev 20:1220:12, 25 January 2011‎ imported>Yozen‎ 8,689 bytes +245‎ Added all assignment stubs. Syllabus ready for customized changes.
• curprev 20:1020:10, 25 January 2011‎ imported>Yozen‎ 8,444 bytes +1,670‎ No edit summary
• curprev 19:4019:40, 25 January 2011‎ imported>Yozen‎ 6,774 bytes −65‎ Still testing collapsible tables
• curprev 19:0719:07, 25 January 2011‎ imported>Yozen‎ 6,839 bytes +558‎ More formatting. Testing collapsible assignments
• curprev 18:4818:48, 25 January 2011‎ imported>Yozen‎ 6,281 bytes +6,281‎ First draft.