Data Page

From QiuLab
Revision as of 20:25, 31 July 2013 by imported>Rayrah (Created page with "<h1>Bio::Tools::CodonOptTable</h1> <p><span style="color:green" cite="http://">Report for <span class="caps">BBA15</span></span></p> <p><span style="color:red" cite="http://...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Bio::Tools::CodonOptTable

Report for BBA15

Codon Adaptation Index (CAI) for sequence : 0.47

GC percentage for sequence : 33.58%

GENETIC CODE USED : 1 <a href="http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi">more about genetic code</a>

CODON USAGE

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
COUNT15O7OOOO2O67117O14O41910426OO8O511O95O3439212OOO14106O16OOO13143O123O21111


Relative Synonimous Codon Usage (RSCU)

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RSCU0.311.540.002.150.000.000.000.006.000.000.921.081.220.780.002.002.000.000.351.651.820.730.361.090.000.001.850.001.152.360.001.931.070.000.640.191.811.000.671.330.000.000.004.000.892.221.330.000.221.330.000.000.001.731.870.400.001.000.801.200.000.331.831.83


Relative Adaptiveness of Codon

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RAC0.140.710.001.000.000.000.000.001.000.000.861.001.000.640.001.001.000.000.211.001.000.400.200.600.000.001.000.000.621.000.000.820.450.000.270.101.001.000.501.000.000.000.001.000.401.000.600.000.100.600.000.000.000.931.000.210.001.000.671.000.000.181.001.00


Monomers

A352
T192
G154
C121


<a href="http://search.cpan.org/~shardiwal/Bio-Tools-CodonOptTable-1.05/lib/Bio/Tools/CodonOptTable.pm">Source code</a> is available.

Bio::Tools::CodonOptTable

Report for BBA24

Codon Adaptation Index (CAI) for sequence : 0.50

GC percentage for sequence : 32.46%

GENETIC CODE USED : 1 <a href="http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi">more about genetic code</a>

CODON USAGE

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
COUNT171721OO2O4827224O3155211O15O77O5311324562OO31351OO1OOO8811O112224


Relative Synonimous Codon Usage (RSCU)

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RSCU0.251.750.251.752.401.200.000.002.400.000.671.330.441.561.001.002.000.000.331.672.220.890.440.440.002.001.250.001.752.470.001.761.060.350.350.221.781.001.500.500.000.003.001.001.803.000.600.000.000.600.000.000.001.781.780.220.220.001.001.000.800.800.801.60


Relative Adaptiveness of Codon

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RAC0.141.000.141.001.000.500.000.001.000.000.501.000.291.001.001.001.000.000.201.001.000.400.200.200.001.000.710.001.001.000.000.710.430.140.140.131.001.001.000.330.000.001.000.330.601.000.200.000.000.200.000.000.001.001.000.130.130.001.001.000.500.500.501.00


Monomers

A248
T139
G102
C84


<a href="http://search.cpan.org/~shardiwal/Bio-Tools-CodonOptTable-1.05/lib/Bio/Tools/CodonOptTable.pm">Source code</a> is available.

Bio::Tools::CodonOptTable

Report for BBA68

Codon Adaptation Index (CAI) for sequence : 0.48

GC percentage for sequence : 27.62%

GENETIC CODE USED : 1 <a href="http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi">more about genetic code</a>

CODON USAGE

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
COUNT26O3OOOO3O4161122O13O421321121125147295O34334721O14153O24OOO8O41136OO21


Relative Synonimous Codon Usage (RSCU)

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RSCU0.732.180.001.090.000.000.000.006.000.000.401.600.151.852.000.002.000.000.321.681.711.140.570.571.330.671.160.481.351.620.462.081.150.000.690.221.781.001.560.440.670.000.672.670.402.001.200.000.801.600.000.000.002.460.001.230.311.000.671.330.000.002.671.33


Relative Adaptiveness of Codon

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RAC0.331.000.000.500.000.000.000.001.000.000.251.000.081.001.000.001.000.000.191.001.000.670.330.331.000.500.860.361.000.780.221.000.560.000.330.121.001.001.000.290.250.000.251.000.201.000.600.000.400.800.000.000.001.000.000.500.131.000.501.000.000.001.000.50


Monomers

A346
T199
G97
C111


<a href="http://search.cpan.org/~shardiwal/Bio-Tools-CodonOptTable-1.05/lib/Bio/Tools/CodonOptTable.pm">Source code</a> is available.

Bio::Tools::CodonOptTable

Report for BBB18

Codon Adaptation Index (CAI) for sequence : 0.50

GC percentage for sequence : 29.17%

GENETIC CODE USED : 1 <a href="http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi">more about genetic code</a>

CODON USAGE

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
COUNT16O9O2111115247153421133615537162973010O201121010429194O1611794O120OOO1094O3175121314


Relative Synonimous Codon Usage (RSCU)

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RSCU0.251.500.002.250.000.750.380.384.130.380.341.660.641.360.861.141.910.090.151.852.000.670.400.930.291.711.320.321.361.130.002.261.250.231.130.381.621.001.650.350.000.221.332.441.021.320.590.000.152.930.000.000.001.741.570.700.001.001.550.450.130.271.731.87


Relative Adaptiveness of Codon

CODONGCCGCAGCGGCTCGAAGGCGTCGGAGACGCAACAATGACGATTGCTGTCAACAGGAGGAAGGAGGTGGGGGCCACCATATTATCATACTTCTGTTACTACTCTTGAAGAAAATGTTTTTCCCGCCCCCACCTAGTTCAAGCTCGTCCTCTTAGTGATAAACTACAACCACGTGGTATTACGTCGTGGTTGTA
AMINOACIDAlaAlaAlaAlaArgArgArgArgArgArgAsnAsnAspAspCysCysGlnGlnGluGluGlyGlyGlyGlyHisHisIleIleIleLeuLeuLeuLeuLeuLeuLysLysMetPhePheProProProProSerSerSerSerSerSerStopStopStopThrThrThrThrTrpTyrTyrValValValVal
RAC0.110.670.001.000.000.180.090.091.000.090.211.000.471.000.751.001.000.050.081.001.000.330.200.470.171.000.970.231.000.500.001.000.550.100.500.241.001.001.000.210.000.090.551.000.350.450.200.000.051.000.000.000.001.000.900.400.001.001.000.290.070.140.931.00


Monomers

A626
T496
G248
C214


<a href="http://search.cpan.org/~shardiwal/Bio-Tools-CodonOptTable-1.05/lib/Bio/Tools/CodonOptTable.pm">Source code</a> is available.