EBL:Ortholog Alignments: Difference between revisions

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==References==
==References==
* '''Schutzer SE, Fraser-Liggett CM, Casjens SR, Qiu WG, Dunn JJ, Mongodin EF, Luft BJ.''' Whole Genome Sequences of Thirteen Isolates of ''Borrelia burgdorferi''. Journal of bacteriology 2010
* '''Schutzer SE, Fraser-Liggett CM, Casjens SR, Qiu WG, Dunn JJ, Mongodin EF, Luft BJ.''' Whole Genome Sequences of Thirteen Isolates of ''Borrelia burgdorferi''. Journal of Bacteriology 2010
* '''Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, Adams MD, Gocayne J, Weidman J, Utterback T, Watthey L, McDonald L, Artiach P, Bowman C, Garland S, Fuji C, Cotton MD, Horst K, Roberts K, Hatch B, Smith HO, Venter JC.''' Genomic sequence of a Lyme disease spirochaete, ''Borrelia burgdorferi''. Nature 1997, 390:580-6.
* '''Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, Adams MD, Gocayne J, Weidman J, Utterback T, Watthey L, McDonald L, Artiach P, Bowman C, Garland S, Fuji C, Cotton MD, Horst K, Roberts K, Hatch B, Smith HO, Venter JC.''' Genomic sequence of a Lyme disease spirochaete, ''Borrelia burgdorferi''. Nature 1997, 390:580-6.

Revision as of 15:12, 2 December 2010

Phylogenetic tree of 15 B. burgdorferi strains.
Phylogenetic tree of 15 B. burgdorferi strains.


Download alignment archives (tar.gz, gzipped-tar format)

Alignment type Replicon (Ortholog count)
Main

(748)

cp26

(26)

lp54

(61)

Intraspecific nuc nuc nuc
pep pep pep
Interspecific nuc nuc nuc
pep pep pep

References

  • Schutzer SE, Fraser-Liggett CM, Casjens SR, Qiu WG, Dunn JJ, Mongodin EF, Luft BJ. Whole Genome Sequences of Thirteen Isolates of Borrelia burgdorferi. Journal of Bacteriology 2010
  • Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, Adams MD, Gocayne J, Weidman J, Utterback T, Watthey L, McDonald L, Artiach P, Bowman C, Garland S, Fuji C, Cotton MD, Horst K, Roberts K, Hatch B, Smith HO, Venter JC. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature 1997, 390:580-6.