Hackathon 2020: Difference between revisions

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=Photos=
=Photos=
<gallery>
<gallery>
Image: Hackaton.png|Jan 31, 2014, Participants: Daniel, Girish, Pedro, Rayees, Raymond, Regina, Saymon, Weigang
Image: Hackaton-1.jpg|Team annotation: Daniel, Girish, Pedro, Rayees, Raymond, Regina, Saymon, Weigang
Image:Tick-hunting-2010-07-212.jpg|Collecting ticks
Image:Hackaton-2.jpg|Team Shiny App: Collecting ticks
Image:tick2-small.jpg|A host-seeking female adult Lyme tick (''Ixodes scapularis'')
Image:Hackaton-3.jpg|Whole group
Image:tick1-small.jpg|The same tick moving
</gallery>
</gallery>
=Teams=
=Teams=
* Genome collection: Edgar, Brian
* Genome collection: Edgar, Brian

Revision as of 19:11, 8 February 2020

Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422

Photos

Teams

  • Genome collection: Edgar, Brian
  • Genbank file parsing: Edgar, Lia
  • Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
  • Database and database tools: Saymon and Lia
  • Genome website development: Edgar & Lia
  • Epidemiology model & app development: Brian, Chris, Junho

Links

  1. Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
  2. ncoV website from nextstrain: https://nextstrain.org/ncov

Preps

  • Jan 30: Hackathon announced
  • Feb 6
    • Genome sequences downloaded and parsed (Edgar)
    • Database design and population (Lia)