Pars and Dollop Parsimony Output

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Dollop Output

Dollo and polymorphism parsimony algorithm, version 3.68

Dollo parsimony method

User-defined tree:
  
                           +--PaerugPA01
  +--------------------------2  
  !                          +--PaerLESB58
  !  
  !                       +-----Paerug2192
  !           +-----------4  
  !           !           !  +--PaerugiM18
  !           !           +--5  
  !           !              +--PaeruPACS2
  +-----------3  
--1           !              +--Paeru39016
  !           !           +--8  
  !           !        +--7  +--PaeruNCGM2
  !           !        !  !  
  !           +--------6  +-----PaeruUCBPP
  !                    !  
  !                    +--------PaerugiPA7
  !  
  !                          +--PaeruC3719
  +--------------------------9  
                             +--PaerugiDK2

requires a total of   1674.000

Pars Output

Discrete character parsimony algorithm, version 3.68

User-defined tree:

          +-----------------------PaerugPA01
  +-------2  
  |       +-------------------PaerLESB58
  |  
  |            +-----------------------Paerug2192
  |     +------4  
  |     |      |     +------------PaerugiM18
  |     |      +-----5  
  |     |            +-----------------------PaeruPACS2
  1-----3  
  |     |                             +-----------------------Paeru39016
  |     |                   +---------8  
  |     |           +-------7         +-------PaeruNCGM2
  |     |           |       |  
  |     +-----------6       +-----------------PaeruUCBPP
  |                 |  
  |                 +-----------------------PaerugiPA7
  |  
  |        +-----------------------PaeruC3719
  +--------9  
           +-----------------------PaerugiDK2


requires a total of   2249.000

  between      and       length
  -------      ---       ------
     1           2         32.17
     2      PaerugPA01     135.92
     2      PaerLESB58     85.08
     1           3         24.42
     3           4         30.42
     4      Paerug2192     337.75
     4           5         25.00
     5      PaerugiM18     55.75
     5      PaeruPACS2     109.25
     3           6         50.67
     6           7         33.17
     7           8         41.17
     8      Paeru39016     180.17
     8      PaeruNCGM2     34.83
     7      PaeruUCBPP     74.33
     6      PaerugiPA7     390.50
     1           9         38.42
     9      PaeruC3719     447.67
     9      PaerugiDK2     122.33