Spombe: Difference between revisions

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imported>Lia
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| MAPlot of 240 genes (s7 vs. s1) || [[File:MAPlot-s1s7.pdf|thumbnail]] || [[File:Sig-genes-s7-s1.xlsx|thumbnail]]
| MAPlot of 240 genes (s7 vs. s1) || [[File:MAPlot-s1s7.pdf|thumbnail]] || [[File:Sig-genes-s7-s1.xlsx|thumbnail]]
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=Friday, October 25, 2013=
=Friday, October 25, 2013=

Revision as of 02:38, 14 November 2013

Wednesday, November 13, 2013

  • Differentially expressed genes (fold_change >=1)
Interactive MA Plots Excel file
s4 vs. s1
s7 vs. s1



Tuesday, November 12, 2013

Interactive MA Plots


Tuesday, November 5, 2013

Differentially expressed genes (fold_change >=2)


Monday, November 4, 2013

Linked plots for C/N ratio:


Sunday, November 3, 2013

Interactive MA Plots for C/N ratios


Saturday, November 2, 2013

Interactive MA Plots for total expression levels


Tuesday, October 30, 2013

Gene export affected by OE or KD of nup211: Dotplot of C/N ratios of genes expression

Title Plot Excel file
Strain s4 vs. s1
Strain s7 vs. s1


Monday, October 29, 2013

Differentially expressed genes (fold_change >=2)

Title Plot Excel file
MAPlot of 158 genes (s4 vs. s1)
MAPlot of 240 genes (s7 vs. s1)


Friday, October 25, 2013

Comparison of 3 Samples with total mRNA (We debugged rows with multiple gene IDs)

Title Plot Plot (scaled by gene) Excel file
Heatmap of 90 significant genes in 3 samples

Wednesday, October 23, 2013

Comparison of 3 Samples with total mRNA

Title Plot Plot (scaled by gene) Excel file
Heatmap of 89 significant genes in 3 samples

Thursday, October 17, 2013

mRNA export affected by KD or OE of nup211

Title Plot
Export (C/N) of 40 genes affected by KD of nup211 (heatmap)
Export (C/N) of 39 genes affected by OE of nup211 (heatmap)

Wednesday, October 16, 2013

Comparison of 4 Samples with total mRNA

Title Plot Plot (scaled by gene)
Heatmap of 76 significant genes

Friday, October 11, 2013

Comparison of all 10 Samples

Title Plot Plot (scaled by gene)
Barplot Nup 211
Heatmap of 13 genes of interest
Heatmap of 80 significant genes
Heatmap of 39 genes of interest

Tuesday, October 8, 2013

Comparison between Samples 1,4,7, and 10

Title Plots
Volcano Plots
Vocano-4-samples.png
Heatmap of 13 genes of interest
Heatmap of 76 significant genes

References