Aeruginosa PAML
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Paeruginosa_C3719_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAG CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAA GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAC TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TAC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA TTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGT TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCA GCG ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAC GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGT CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_PAO1_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGT GCG GTA GAG CTG CTG AAG CAA CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAA GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAT TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGT TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA TTG TTC GGC CAC GAG AAG GGT GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGT TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTT GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCG GCA ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAC GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGC CGC ACC ACG CTG GTA GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGT GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_2192_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG TTG CTG AAG CAA CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAA GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAC TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA CTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGT TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAA CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCG GCG ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAT GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGC CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
strain=39016_ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAA CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAG GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAT TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCT AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA CTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGC TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAA CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCG GCC ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAC GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGC CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_DK2_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGT AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAG CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAA GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAC TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGT TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA TTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGC CGT GCC GGA CGT TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCG GCA ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGT GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAT GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGC CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_LESB58_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAG CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAA GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAT TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA CTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGT TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCA GCG ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCT TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTT AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAT GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGC CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_M18_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAG CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAA GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAC TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA TTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGT TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCA GCG ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGT GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAC GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGT CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_NCGM2.S1_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAA CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAG GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAT TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA CTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGC TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAA CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCG GCC ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAC GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGC CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_UCBPP-PA14_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAA CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAG GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAT TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA CTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGC TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAC GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCG GCG ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCT GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAT GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGC CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_PACS2_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAC AAT CTC GAT CGC AGT CGC GAC CTG GCA GTC ATT CTC AAC TTC CTC GGC GAA GAT CAG CTG ACC TGC AAC AGC GAG GAT TGG CGA GAG GTA GCG GCG GGC CTG AGC AAC AGT CGC GAA GCC CTG TGC GTG CTG CTC GGT AGC GTC GAG TCG AAG GGC GGG GCG GTA GAG CTG CTG AAG CAG CTG GCC AGT TGG GAC GAG TAC CTG CCG ATC CTG CTG ATC GGC GAG CCG GCC CCG GCC GAC TGG CCG GAA GAG CTG CGC CGC CGG GTG CTC GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAG CTG CTC GAC TCC CTG CAT CGC GCC CAG GTC TAC CGC GAG ATG TAC GAC CAG GCC CGC GAG CGC GGC CGT TCC CGC GAG CCG AAC CTG TTC CGC AGC CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGC GAG TCC GGC ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAT TAC CAT TCC AAG CGC CGC GAG GGG CCC TTC GTC CCG GTG AAC TGC GGG GCG ATC CCG GCG GAA CTG CTG GAA AGC GAA TTG TTC GGC CAC GAG AAG GGC GCC TTC ACC GGT GCC ATC ACC AGT CGT GCC GGA CGT TTC GAG CTG GCC AAC GGC GGC ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG CTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAG CGC ACC TTC GAA AGG GTC GGC AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAG ATG ATC GAG GAC GGC ACT TTC CGC GAA GAC CTC TAC TAC CGC CTC AAC GTA TTC CCC ATC GAG ATG GCG CCG CTG CGC GAG CGG GTG GAA GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAT GAG AAG CGC GGG TCG ATC CGC TTC AAC TCG GCG GCA ATC ATG TCG CTC TGC CGC CAC GAC TGG CCG GGC AAC GTC CGC GAA CTG GCG AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCA TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAG CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAA GGC CTG GAC CTC AAG GAC TAC CTG GCC AAC CTC GAG CAG GGC CTG ATC CAG CAG GCC CTC GAC GAT GCC GGC GGA GTG GTC GCG CGG GCC GCC GAA CGC CTG CGC ATC CGT CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Paeruginosa_PA7_fleQ ATG TGG CGC GAA ACC AAA CTC TTG CTG ATT GAC GAT AAT CTC GAT CGC AGT CGC GAC CTG GCG GTC ATT CTC AAC TTC CTC GGC GAA GAC CAG CTG ACC TGC AAC AGC GAG GAT TGG CGC GAG GTC GCC GCA AGT CTG AGC AAC AGT CGC GAG GCC CTG TGC GTG CTG CTC GGC AGC GTC GAG TCG AAG GGT GGG GCG GTC GAG TTG CTC AAG CAA CTG GCG AGT TGG GAC GAG TAT CTG CCG ATC CTG CTG ATC GGC GAA CCG GCG CCG GCC GAC TGG CCG GAA GAG CTG CGG CGC CGG GTG CTG GCC AGC CTG GAG ATG CCG CCC AGC TAC AAC AAA CTG CTC GAC TCG CTG CAT CGT GCC CAG GTC TAC CGC GAA ATG TAC GAC CAG GCC CGC GAG CGC GGC CGC TCC CGC GAG CCC AAC CTG TTC CGC AGT CTG GTC GGC ACC AGC CGG GCG ATC CAG CAG GTG CGG CAG ATG ATG CAG CAG GTC GCC GAT ACC GAT GCC AGC GTG CTG ATC CTC GGT GAG TCG GGT ACC GGC AAG GAA GTG GTG GCG CGC AAC CTG CAC TAC CAC TCC AAG CGC CGC GAA GGA CCG TTC GTG CCG GTC AAC TGC GGG GCG ATT CCG GCG GAG CTG CTG GAA AGC GAG CTG TTC GGC CAT GAG AAG GGT GCC TTC ACC GGC GCC ATC ACC AGC CGT GCC GGG CGC TTC GAA TTG GCC AAT GGC GGT ACC CTG TTC CTC GAC GAG ATC GGC GAC ATG CCG TTG CCG ATG CAG GTC AAG CTG CTG CGC GTG CTG CAG GAA CGC ACC TTC GAG CGG GTC GGT AGC AAC AAG ACG CAG AAC GTC GAC GTG CGG ATC ATC GCC GCG ACC CAC AAG AAC CTC GAG AAA ATG ATC GAG GAT GGC ACC TTC CGC GAG GAC CTC TAC TAC CGC CTG AAC GTG TTT CCC ATC GAA ATG GCG CCA CTG CGC GAG CGG GTG GAG GAC ATC GCC CTG CTG CTC AAC GAA CTG ATC TCG CGG ATG GAG CAC GAG AAG CGC GGT TCG ATC CGC TTC AAC TCG GCG GCG ATC ATG TCG CTC TGC CGC CAT GAT TGG CCG GGC AAC GTT CGC GAG CTG GCC AAC CTG GTG GAG CGC CTG GCG ATC ATG CAT CCC TAC GGG GTG ATC GGG GTC GGC GAA CTG CCG AAG AAA TTC CGC CAT GTC GAC GAC GAG GAC GAA CAA CTC GCC AGC AGC CTG CGC GAA GAG CTG GAA GAG CGC GCG GCG ATC AAC GCC GGG CTG CCG GGA ATG GAC GCG CCG GCG ATG CTG CCG GCC GAG GGC CTG GAT CTC AAG GAC TAC CTT GCC AAC CTC GAG CAG GGC TTG ATC CAG CAG GCG CTG GAC GAT GCC GGC GGG GTG GTC GCG CGA GCG GCC GAG CGG CTG CGC ATC CGG CGC ACC ACG CTG GTG GAG AAG ATG CGC AAG TAC GGC ATG AGC CGG CGC GAC GAC GAC CTG TCG GAT GAT
Printing out site pattern counts
11 324 P
Paeruginosa_C3719_fleQ AAA AAC AAC AAG AAG AAT ACC ACG ACT AGC AGC AGG AGT AGT ATC ATC ATG ATT CAA CAC CAC CAG CAG CAT CAT CAT CCC CCC CCC CCG CCG CCG CGA CGC CGC CGC CGC CGC CGC CGG CGG CGT CGT CGT CTC CTC CTC CTG CTG CTG CTG CTG GAA GAA GAA GAC GAC GAC GAC GAG GAG GAG GAT GAT GCA GCA GCC GCC GCC GCC GCG GCG GCG GCG GGA GGA GGC GGC GGC GGC GGC GGC GGG GGG GGG GGG GGT GTA GTA GTC GTC GTC GTC GTG GTG GTG TAC TAC TAC TCC TCC TCG TGC TGG TTC TTC TTG TTG
Paeruginosa_PAO1_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ..T ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ..G ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ..T ... ... ... ... ... ... ..T ..A ... ... ... ... .G. ... ... ... ... ... ... ... ... ...
Paeruginosa_2192_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ... ... ... ... ... T.. ... ... ... ... ... ..T ... ..A ... ... ... ... ... ..G ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... C.. ...
strain=39016_ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ..C ... ... ... ... ... ... ... ... ... ... ... ..G ... ... ... ..T ..A ... ... ... ... ... ..G ... ... ... ..T ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... C.. ...
Paeruginosa_DK2_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ..G ... ... ... ... ..A ... ... ... ... ... ... ... ... ..T ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... ... ...
Paeruginosa_LESB58_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ..T ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... C.. ...
Paeruginosa_M18_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... ... ...
Paeruginosa_NCGM2.S1_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ..C ... ... ... ... ... ... ... ... ... ... ... ..G ... ... ... ..T ..A ... ... ... ... ... ..G ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... C.. ...
Paeruginosa_UCBPP-PA14_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ..C ... ... ... ... ... ... ... ... ... ... ... ..G ... ... ..T ..T ... ... ... ... ... ... ..G ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... C.. ...
Paeruginosa_PACS2_fleQ ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ..G ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .G. ... ... ... ... ... ... ... ... ...
Paeruginosa_PA7_fleQ ... ... ..T ..A ... ... ... ... ..C ... ..T C.. ..C ... ... ..T ... ... ... ... ..T ..A ... ..C ..C ... ... ..G ... ..A ..C ... ..C ... ..G ..T ... ... ... ..A ... ..G ..C ... ... ..G ... ..C ... ..T T.. T.. ... ..G ... ... ..T ..T ... ... ..A ... ..C ... ..G ..G ... ..G ... ... ... ..A ..C ... ... ..G A.T ... ..T ... ... ..T ..A ... ..T ... ..C ..C ..G ... ..G ..T ... ... ..C ... ... ..T .G. ... ..G ... ... ... ... ..T C.. ...
2 17 1 2 13 1 11 2 1 12 1 1 1 3 19
1 16 2 1 1 2 1 14 1 2 3 2 1 1 1
1 14 1 28 2 1 1 1 1 1 7 1 1 1 14
3 1 1 40 1 3 1 8 9 1 19 4 1 1 1
7 22 1 6 1 1 17 4 1 1 1 1 2 13 1
2 1 14 5 1 1 1 1 4 1 1 1 2 1 10
1 1 1 1 1 12 9 1 1 2 2 6 3 5 11
1 1 1
CODONML (in paml version 4.4c, August 2010) fleq.paml
Model: One dN/dS ratio for branchesdGamma (ncatG=11)
Codon frequency model: Fcodon
Warning: Gamma model for codons. See documentation.Site-class models:
ns = 11 ls = 490
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------
Phe TTT 0 0 0 0 0 0 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 0 0 0 0 0 0 | Cys TGT 0 0 0 0 0 0
TTC 12 12 12 12 12 12 | TCC 4 4 4 4 4 4 | TAC 11 10 10 10 10 10 | TGC 3 4 4 4 4 4
Leu TTA 0 0 0 0 0 0 | TCA 0 0 0 0 0 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 1 2 1 | TCG 6 6 6 6 6 6 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------
Leu CTT 0 0 0 0 0 1 | Pro CCT 0 0 0 0 0 1 | His CAT 6 6 6 6 6 6 | Arg CGT 3 4 2 1 3 2
CTC 18 18 18 18 18 17 | CCC 4 4 4 4 4 3 | CAC 3 3 3 3 3 3 | CGC 34 33 35 36 34 35
CTA 0 0 0 0 0 0 | CCA 0 0 0 0 0 0 | Gln CAA 1 2 2 2 1 1 | CGA 1 1 1 1 1 1
CTG 46 46 46 47 46 47 | CCG 16 16 16 16 16 16 | CAG 15 14 14 14 15 15 | CGG 8 8 8 8 8 8
--------------------------------------------------------------------------------------------------------------
Ile ATT 2 2 2 2 2 2 | Thr ACT 1 1 1 1 1 1 | Asn AAT 1 1 1 1 1 1 | Ser AGT 4 4 4 4 3 4
ATC 20 20 20 20 20 20 | ACC 11 11 11 11 11 11 | AAC 18 18 18 18 18 18 | AGC 13 13 13 13 14 13
ATA 0 0 0 0 0 0 | ACA 0 0 0 0 0 0 | Lys AAA 2 2 2 2 2 2 | Arg AGA 0 0 0 0 0 0
Met ATG 16 16 16 16 16 16 | ACG 2 2 2 2 2 2 | AAG 15 15 15 15 15 15 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------
Val GTT 0 1 0 0 0 0 | Ala GCT 0 0 0 1 0 0 | Asp GAT 7 8 8 8 8 9 | Gly GGT 1 3 1 1 3 1
GTC 13 12 13 13 13 13 | GCC 23 23 23 23 23 23 | GAC 25 24 24 24 24 23 | GGC 23 22 23 23 21 23
GTA 3 4 3 3 3 3 | GCA 2 2 1 1 2 2 | Glu GAA 18 18 19 18 18 18 | GGA 3 3 3 3 3 3
GTG 14 13 14 14 14 14 | GCG 17 17 18 17 17 17 | GAG 30 30 29 30 30 30 | GGG 7 6 7 7 7 7
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------
Phe TTT 0 0 0 0 1 | Ser TCT 0 0 0 0 0 | Tyr TAT 0 0 0 0 1 | Cys TGT 0 0 0 0 0
TTC 12 12 12 12 11 | TCC 4 4 4 4 2 | TAC 10 10 10 10 9 | TGC 4 4 4 4 4
Leu TTA 0 0 0 0 0 | TCA 0 0 0 0 0 | *** TAA 0 0 0 0 0 | *** TGA 0 0 0 0 0
TTG 2 1 1 2 5 | TCG 6 6 6 6 8 | TAG 0 0 0 0 0 | Trp TGG 5 5 5 5 5
--------------------------------------------------------------------------------------------------
Leu CTT 0 0 0 0 1 | Pro CCT 0 0 0 0 0 | His CAT 6 6 5 6 5 | Arg CGT 4 1 1 4 2
CTC 18 18 18 18 16 | CCC 4 4 4 3 4 | CAC 3 3 4 3 4 | CGC 33 36 36 33 33
CTA 0 0 0 0 0 | CCA 0 0 0 1 1 | Gln CAA 1 2 2 1 2 | CGA 1 1 1 1 1
CTG 46 47 47 46 44 | CCG 16 16 16 16 15 | CAG 15 14 14 15 14 | CGG 8 8 8 8 11
--------------------------------------------------------------------------------------------------
Ile ATT 2 2 2 2 3 | Thr ACT 1 1 1 1 0 | Asn AAT 1 1 1 1 2 | Ser AGT 4 4 4 4 5
ATC 20 20 20 20 19 | ACC 11 11 11 11 12 | AAC 18 18 18 18 17 | AGC 13 13 13 13 13
ATA 0 0 0 0 0 | ACA 0 0 0 0 0 | Lys AAA 2 2 2 2 4 | Arg AGA 0 0 0 0 0
Met ATG 16 16 16 16 16 | ACG 2 2 2 2 2 | AAG 15 15 15 15 13 | AGG 1 1 1 1 0
--------------------------------------------------------------------------------------------------
Val GTT 0 0 0 0 1 | Ala GCT 0 0 1 0 0 | Asp GAT 7 8 9 8 11 | Gly GGT 1 1 1 2 7
GTC 13 13 13 13 14 | GCC 23 24 22 23 21 | GAC 25 24 23 24 21 | GGC 23 23 23 22 17
GTA 3 3 3 3 0 | GCA 2 1 1 2 1 | Glu GAA 18 18 17 18 16 | GGA 3 3 3 3 2
GTG 14 14 14 14 15 | GCG 17 17 18 17 20 | GAG 30 30 31 30 32 | GGG 7 7 7 7 7
--------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: Paeruginosa_C3719_fleQ
position 1: T:0.08776 C:0.31633 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.31020 G:0.21633
position 3: T:0.05102 C:0.47959 A:0.06122 G:0.40816
Average T:0.14558 C:0.32381 A:0.19592 G:0.33469
#2: Paeruginosa_PAO1_fleQ
position 1: T:0.08776 C:0.31633 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.06122 C:0.47143 A:0.06531 G:0.40204
Average T:0.14898 C:0.32109 A:0.19660 G:0.33333
#3: Paeruginosa_2192_fleQ
position 1: T:0.08776 C:0.31633 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.05102 C:0.47959 A:0.06327 G:0.40612
Average T:0.14558 C:0.32381 A:0.19592 G:0.33469
#4: strain=39016_
position 1: T:0.08571 C:0.31837 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.05102 C:0.48163 A:0.06122 G:0.40612
Average T:0.14490 C:0.32517 A:0.19524 G:0.33469
#5: Paeruginosa_DK2_fleQ
position 1: T:0.08776 C:0.31633 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.05510 C:0.47551 A:0.06122 G:0.40816
Average T:0.14694 C:0.32245 A:0.19524 G:0.33537
#6: Paeruginosa_LESB58_fleQ
position 1: T:0.08571 C:0.31837 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.05714 C:0.47347 A:0.06122 G:0.40816
Average T:0.14694 C:0.32245 A:0.19524 G:0.33537
#7: Paeruginosa_M18_fleQ
position 1: T:0.08776 C:0.31633 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.05306 C:0.47755 A:0.06122 G:0.40816
Average T:0.14626 C:0.32313 A:0.19524 G:0.33537
#8: Paeruginosa_NCGM2.S1_fleQ
position 1: T:0.08571 C:0.31837 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.04898 C:0.48367 A:0.06122 G:0.40612
Average T:0.14422 C:0.32585 A:0.19524 G:0.33469
#9: Paeruginosa_UCBPP-PA14_fleQ
position 1: T:0.08571 C:0.31837 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.05102 C:0.47959 A:0.05918 G:0.41020
Average T:0.14490 C:0.32449 A:0.19456 G:0.33605
#10: Paeruginosa_PACS2_fleQ
position 1: T:0.08776 C:0.31633 A:0.21633 G:0.37959
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.05714 C:0.47143 A:0.06327 G:0.40816
Average T:0.14762 C:0.32109 A:0.19592 G:0.33537
#11: Paeruginosa_PA7_fleQ
position 1: T:0.09388 C:0.31224 A:0.21633 G:0.37755
position 2: T:0.29796 C:0.17551 A:0.30816 G:0.21837
position 3: T:0.07959 C:0.44286 A:0.05510 G:0.42245
Average T:0.15714 C:0.31020 A:0.19320 G:0.33946
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 1 | Ser S TCT 0 | Tyr Y TAT 1 | Cys C TGT 0
TTC 131 | TCC 42 | TAC 110 | TGC 43
Leu L TTA 0 | TCA 0 | *** * TAA 0 | *** * TGA 0
TTG 21 | TCG 68 | TAG 0 | Trp W TGG 55
------------------------------------------------------------------------------
Leu L CTT 2 | Pro P CCT 1 | His H CAT 64 | Arg R CGT 27
CTC 195 | CCC 42 | CAC 35 | CGC 378
CTA 0 | CCA 2 | Gln Q CAA 17 | CGA 11
CTG 508 | CCG 175 | CAG 159 | CGG 91
------------------------------------------------------------------------------
Ile I ATT 23 | Thr T ACT 10 | Asn N AAT 12 | Ser S AGT 44
ATC 219 | ACC 122 | AAC 197 | AGC 144
ATA 0 | ACA 0 | Lys K AAA 24 | Arg R AGA 0
Met M ATG 176 | ACG 22 | AAG 163 | AGG 10
------------------------------------------------------------------------------
Val V GTT 2 | Ala A GCT 2 | Asp D GAT 91 | Gly G GGT 22
GTC 143 | GCC 251 | GAC 261 | GGC 243
GTA 31 | GCA 17 | Glu E GAA 196 | GGA 32
GTG 154 | GCG 192 | GAG 332 | GGG 76
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.08757 C:0.31670 A:0.21633 G:0.37941
position 2: T:0.29796 C:0.17551 A:0.30835 G:0.21818
position 3: T:0.05603 C:0.47421 A:0.06122 G:0.40853
Average T:0.14719 C:0.32214 A:0.19530 G:0.33537
Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG):
0.00018553 0.02430427 0.00000000 0.00389610
0.00000000 0.00779221 0.00000000 0.01261596
0.00018553 0.02040816 0.00000000 0.00000000
0.00000000 0.00797774 0.00000000 0.01020408
0.00037106 0.03617811 0.00000000 0.09424861
0.00018553 0.00779221 0.00037106 0.03246753
0.01187384 0.00649351 0.00315399 0.02949907
0.00500928 0.07012987 0.00204082 0.01688312
0.00426716 0.04063080 0.00000000 0.03265306
0.00185529 0.02263451 0.00000000 0.00408163
0.00222635 0.03654917 0.00445269 0.03024119
0.00816327 0.02671614 0.00000000 0.00185529
0.00037106 0.02653061 0.00575139 0.02857143
0.00037106 0.04656772 0.00315399 0.03562152
0.01688312 0.04842301 0.03636364 0.06159555
0.00408163 0.04508349 0.00593692 0.01410019
Nei & Gojobori 1986. dN/dS (dN, dS)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)
Paeruginosa_C3719_fleQ
Paeruginosa_PAO1_fleQ 0.0297 (0.0009 0.0306)
Paeruginosa_2192_fleQ 0.0469 (0.0009 0.0193) 0.0000 (0.0000 0.0334)
strain=39016_ 0.0327 (0.0009 0.0277) 0.0000 (0.0000 0.0334) 0.0000 (0.0000 0.0193)
Paeruginosa_DK2_fleQ 0.0410 (0.0009 0.0221) 0.0000 (0.0000 0.0306) 0.0000 (0.0000 0.0249) 0.0000 (0.0000 0.0363)
Paeruginosa_LESB58_fleQ 0.0549 (0.0009 0.0165) 0.0000 (0.0000 0.0363) 0.0000 (0.0000 0.0193) 0.0000 (0.0000 0.0277) 0.0000 (0.0000 0.0277)
Paeruginosa_M18_fleQ 0.3323 (0.0009 0.0027) 0.0000 (0.0000 0.0334) 0.0000 (0.0000 0.0221) 0.0000 (0.0000 0.0306) 0.0000 (0.0000 0.0249) 0.0000 (0.0000 0.0193)
Paeruginosa_NCGM2.S1_fleQ 0.0364 (0.0009 0.0249) 0.0000 (0.0000 0.0306) 0.0000 (0.0000 0.0165) 0.0000 (0.0000 0.0027) 0.0000 (0.0000 0.0334) 0.0000 (0.0000 0.0249) 0.0000 (0.0000 0.0277)
Paeruginosa_UCBPP-PA14_fleQ 0.0327 (0.0009 0.0277) 0.0000 (0.0000 0.0363) 0.0000 (0.0000 0.0193) 0.0000 (0.0000 0.0165) 0.0000 (0.0000 0.0334) 0.0000 (0.0000 0.0221) 0.0000 (0.0000 0.0306) 0.0000 (0.0000 0.0137)
Paeruginosa_PACS2_fleQ 0.0549 (0.0009 0.0165) 0.0000 (0.0000 0.0306) 0.0000 (0.0000 0.0249) 0.0000 (0.0000 0.0363) 0.0000 (0.0000 0.0110) 0.0000 (0.0000 0.0249) 0.0000 (0.0000 0.0193) 0.0000 (0.0000 0.0334) 0.0000 (0.0000 0.0334)
Paeruginosa_PA7_fleQ 0.0064 (0.0018 0.2853) 0.0030 (0.0009 0.3015) 0.0034 (0.0009 0.2696) 0.0031 (0.0009 0.2891) 0.0031 (0.0009 0.2894) 0.0031 (0.0009 0.2891) 0.0031 (0.0009 0.2894) 0.0032 (0.0009 0.2851) 0.0033 (0.0009 0.2732) 0.0031 (0.0009 0.2934)
Model 0: one-ratio